Browse Element(s) Details


Os.27343.1.A1_at

Description gb:CB664533
DB_XREF= gi:29668258
DB_XREF=OSJNEd10E21.r
CLONE=OSJNEd10E21
TID=Os.27343.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27343 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T51185 (A.thaliana) T51185 resistance protein RPP13 (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3925011/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39200OsAffx.31381.1.S1_at11/1111+22840926..22843324hAT family dimerisation domain containing protein
LOC_Os11g39200Os.57369.1.S1_at2/1111+22840926..22843324hAT family dimerisation domain containing protein
LOC_Os11g39210OsAffx.6388.1.S1_at4/1111+22845476..22847913hypothetical protein
LOC_Os11g39210OsAffx.6388.1.S1_x_at3/1111+22845476..22847913hypothetical protein
LOC_Os11g39220Os.7513.1.S1_at11/1111+22852827..22856982Acyl-coenzyme A oxidase 2, peroxisomal precursor, putative, expressed
LOC_Os11g39220Os.50057.1.S1_at1/1111+22852827..22856982Acyl-coenzyme A oxidase 2, peroxisomal precursor, putative, expressed
LOC_Os11g39230OsAffx.7352.1.S1_at11/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.2.S1_x_at9/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.3.S1_x_at8/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.5.S1_x_at6/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.4.S1_x_at1/1111+22859810..22864593hypothetical protein
LOC_Os11g39240NANA11+22865855..22866779hypothetical protein
LOC_Os11g39250Os.27343.1.A1_at11/1111+22867253..22874086transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g39260Os.49908.1.S1_at11/1111+22874214..22877337RGH2A, putative
LOC_Os11g39270NANA11+22878808..22884814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g39280Os.56221.1.S1_at11/1111+22888587..22890384expressed protein
LOC_Os11g39290Os.47902.1.S1_at9/1111+22893148..22896449Leucine Rich Repeat family protein, expressed
LOC_Os11g39300OsAffx.31383.1.S1_at9/1111+22897537..22900222hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27343.1.A1_at--661--6151Chr11:22872419..22872442 (24 bp)
GAGGTACTTCCTCTTAGTAGATGAT
LOC_Os11g39250
Os.27343.1.A1_at--127--7191Chr11:22872394..22872418 (25 bp)
GTCTGGTCTGTATCTTCATGGGAAT
LOC_Os11g39250
Os.27343.1.A1_at--825--2271Chr11:22872307..22872331 (25 bp)
AAATCTGTAGCTGACGCCAGCACTC
LOC_Os11g39250
Os.27343.1.A1_at--719--4411Chr11:22872292..22872316 (25 bp)
GCCAGCACTCATCAGCAAACAGGTG
LOC_Os11g39250
Os.27343.1.A1_at--420--7771Chr11:22872271..22872295 (25 bp)
GGTGACATCCACATGCTAGATCGGC
LOC_Os11g39250
Os.27343.1.A1_at--174--9091Chr11:22872258..22872282 (25 bp)
TGCTAGATCGGCTTTCAGATGAGAA
LOC_Os11g39250
Os.27343.1.A1_at--637--7391Chr11:22872198..22872222 (25 bp)
GTGATGATTCATGCCCGGACGAGTT
LOC_Os11g39250
Os.27343.1.A1_at--336--9491Chr11:22872134..22872158 (25 bp)
TCTGCCACTGGCAATAGTTGCGGTG
LOC_Os11g39250
Os.27343.1.A1_at--53--3111Chr11:22872122..22872146 (25 bp)
AATAGTTGCGGTGGCAGGACTTCTG
LOC_Os11g39250
Os.27343.1.A1_at--489--951Chr11:22872107..22872131 (25 bp)
AGGACTTCTGGCCAGAGACCCAAGG
LOC_Os11g39250
Os.27343.1.A1_at--549--8051Chr11:22872034..22872058 (25 bp)
GGAGATGAATCTTAGGCCTTGTTTA
LOC_Os11g39250
Target Sequence 
GAGGTACTTCCTCTTAGTAGATGATGTCTGGTCTGTATCTTCATGGGAATACATCTGGGGATCTTTGCCCAAAAATAACA
ATGGCAGTAGAATAGTGGTGACAACAAGGTTCAAATCTGTAGCTGACGCCAGCACTCATCAGCAAACAGGTGACATCCAC
ATGCTAGATCGGCTTTCAGATGAGAAATCAAAACGACTGTTCAATGAAAGAATCTTTAGTGGTGATGATTCATGCCCGGA
CGAGTTCAGGGAAACCAAGGACAAAATTCTGAAGAAATGCGGTGGTCTGCCACTGGCAATAGTTGCGGTGGCAGGACTTC
TGGCCAGAGACCCAAGGTCAAAGAGCCATTGGACAAAGGTGCAAGATTCTTTTAAGTTCAGAGCTGGAGATGAATCTTAG
GCCTTGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27343.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis