Browse Element(s) Details


Os.27362.1.S1_at

Description gb:AK066827.1
DB_XREF= gi:32976845
TID=Os.27362.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27362 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-008-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075C16, full insert sequence.
FL= gb:AK072453.1 gb:AK066827.1 gb:AK104021.1 gb:AK071706.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0859211/11expressed protein
LOC_Os08g297501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08570Os.49356.1.S1_at11/118+4940928..4945862expressed protein
LOC_Os08g08580NANA8+4952123..4956032retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08586Os.27295.1.S1_at11/118+4960071..4962787expressed protein
LOC_Os08g08586Os.10085.1.S1_at1/118+4960071..4962787expressed protein
LOC_Os08g08592Os.27362.1.S1_at11/118+4964702..4967482expressed protein
LOC_Os08g08592Os.27362.1.S2_at11/118+4964702..4967482expressed protein
LOC_Os08g08592OsAffx.29424.1.S1_at7/118+4964702..4967482expressed protein
LOC_Os08g08600OsAffx.5752.1.S1_x_at11/118+4969829..4972830hypothetical protein
LOC_Os08g08600OsAffx.5752.1.S1_at10/118+4969829..4972830hypothetical protein
LOC_Os08g08610OsAffx.20387.1.S1_x_at1/118+4973788..4976378transposon protein, putative, unclassified
LOC_Os08g08620NANA8+4976632..4978593retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08630NANA8+4981172..4981579hypothetical protein
LOC_Os08g08640OsAffx.442.1.S1_x_at6/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.2.S1_s_at4/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.442.1.S1_at4/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.4.S1_x_at4/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.2.S1_x_at3/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.1.S1_x_at2/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.19066.1.S1_at1/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.5.S1_at1/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.24587.1.S1_x_at1/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.1.S1_at1/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.4.S1_at1/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27362.1.S1_at--977--5831Chr08:4966896..4966920 (25 bp)
GACCTCGACGATGGCGACACATGTG
LOC_Os08g08592
Os.27362.1.S1_at--481--5631Chr08:4966881..4966905 (25 bp)
GACACATGTGGTTTGGGCGCCATCG
LOC_Os08g08592
Os.27362.1.S1_at--1103--512Chr08:18150653..18150767 (25 bp)
ATCGCAATCTTTTCGCCCAGGTTAG
LOC_Os08g29750
Os.27362.1.S1_at--387--4531Chr08:4966756..4966777 (22 bp)
GCCCAGGTTAGATAACATGTCAGTT
LOC_Os08g08592
Os.27362.1.S1_at--808--7111Chr08:4966738..4966762 (25 bp)
GTCAGTTTTGCTAGCTATTCGGCCA
LOC_Os08g08592
Os.27362.1.S1_at--540--10011Chr08:4966727..4966751 (25 bp)
TAGCTATTCGGCCAGCCAGAGAGGA
LOC_Os08g08592
Os.27362.1.S1_at--1027--9951Chr08:4966649..4966673 (25 bp)
TACCGAGCGCCCGAGCGGTGGTACT
LOC_Os08g08592
Os.27362.1.S1_at--466--1971Chr08:4966414..4966651 (25 bp)
ACTGAAGATTTCAGGCGGAGCCGGA
LOC_Os08g08592
Os.27362.1.S1_at--1058--7231Chr08:4966328..4966351 (24 bp)
GTCCCAGTTCCTATCTGCCGGTGAT
LOC_Os08g08592
Os.27362.1.S1_at--655--471Chr08:4966131..4966339 (25 bp)
ATCTGCCGGTGATTTTGTTCATTTA
LOC_Os08g08592
Os.27362.1.S1_at--35--3011Chr08:4966106..4966130 (25 bp)
AATGAGCCGTAGGAGGGTGATTTCA
LOC_Os08g08592
Target Sequence 
GACCTCGACGATGGCGACACATGTGGTTTGGGCGCCATCGCAATCTTTTCGCCCAGGTTAGATAACATGTCAGTTTTGCT
AGCTATTCGGCCAGCCAGAGAGGAGGGTTCAAGCTTGCGGACGAAGGTGCACCGAGGAGAGCGCAGTCGAGTGGTGGTAC
CGAGCGCCCGAGCGGTGGTACTGAAGATTTCAGGCGGAGCCGGAGGCGGCAAGGTGGGGCTGCCGGTGTTGGACGGCGCA
CTCGCTTTCCCGCAGGCCACAACGGCGTCCCAGTTCCTATCTGCCGGTGATTTTGTTCATTTAAATGAGCCGTAGGAGGG
TGATTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27362.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis