Browse Element(s) Details


Os.27362.1.S2_at

Description gb:AK072453.1
DB_XREF= gi:32982476
TID=Os.27362.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27362 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-008-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023119K08, full insert sequence.
FL= gb:AK072453.1 gb:AK066827.1 gb:AK104021.1 gb:AK071706.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0859211/11expressed protein
LOC_Os12g035801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08570Os.49356.1.S1_at11/118+4940928..4945862expressed protein
LOC_Os08g08580NANA8+4952123..4956032retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08586Os.27295.1.S1_at11/118+4960071..4962787expressed protein
LOC_Os08g08586Os.10085.1.S1_at1/118+4960071..4962787expressed protein
LOC_Os08g08592Os.27362.1.S1_at11/118+4964702..4967482expressed protein
LOC_Os08g08592Os.27362.1.S2_at11/118+4964702..4967482expressed protein
LOC_Os08g08592OsAffx.29424.1.S1_at7/118+4964702..4967482expressed protein
LOC_Os08g08600OsAffx.5752.1.S1_x_at11/118+4969829..4972830hypothetical protein
LOC_Os08g08600OsAffx.5752.1.S1_at10/118+4969829..4972830hypothetical protein
LOC_Os08g08610OsAffx.20387.1.S1_x_at1/118+4973788..4976378transposon protein, putative, unclassified
LOC_Os08g08620NANA8+4976632..4978593retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08630NANA8+4981172..4981579hypothetical protein
LOC_Os08g08640OsAffx.442.1.S1_x_at6/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.2.S1_s_at4/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.442.1.S1_at4/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.4.S1_x_at4/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.2.S1_x_at3/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.1.S1_x_at2/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.19066.1.S1_at1/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.5.S1_at1/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.24587.1.S1_x_at1/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.1.S1_at1/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.4.S1_at1/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27362.1.S2_at--66--6833Chr12:1435038..1435062 (25 bp)
GTTTATGCATGCTTTCAGTTTTTAA
LOC_Os12g03580
Os.27362.1.S2_at--405--3451Chr08:4965254..4965278 (25 bp)
CAGTTTTTAAATATTGTCAGTGGTT
LOC_Os08g08592
Os.27362.1.S2_at--564--3813Chr12:1435226..1435247 (22 bp)
CTCCTGGTACATGCATTTAATATGA
NONE
Os.27362.1.S2_at--580--252Chr12:1435273..1435321 (25 bp)
ATATCCTGATTATAATTGCTTCTAA
NONE
Os.27362.1.S2_at--608--7652Chr12:1435329..1435391 (24 bp)
GGGTTAAAGAATCACGTCCAACAGC
NONE
Os.27362.1.S2_at--644--7271Chr08:4964959..4964983 (25 bp)
GTCCAACAGCAAATTGCTCTTTTTT
LOC_Os08g08592
Os.27362.1.S2_at--659--51Chr08:4964924..4964948 (25 bp)
ATTGAGCGCATATGAGTAGCGTCAA
LOC_Os08g08592
Os.27362.1.S2_at--989--6951Chr08:4964909..4964933 (25 bp)
GTAGCGTCAATCAAGAGATTGCTCA
LOC_Os08g08592
Os.27362.1.S2_at--778--571Chr08:4964882..4964906 (25 bp)
ATCCACACCAAATATCGGGTGTATA
LOC_Os08g08592
Os.27362.1.S2_at--982--491Chr08:4964869..4964893 (25 bp)
ATCGGGTGTATATATATGAGTCTTG
LOC_Os08g08592
Os.27362.1.S2_at--55--8571Chr08:4964773..4964797 (25 bp)
TGGATTCTGAATGTAATTCCTGGGT
LOC_Os08g08592
Target Sequence 
GTTTATGCATGCTTTCAGTTTTTAAATATTGTCAGTGGTTGATTAAGACTGTTAGATTGGATATATTTATGTCTNTATCN
CNCTATTATGTCATGGATTTTTTTTAAAAAATATTCAGGTAATTACTGCCAATATCATCTTGTTAATATAATGATTTAAT
TATGCATGATAAATAAGTTGTATTTCTTNCTCCTGGTACATGCATTTAATATGACAGAATTTACAAAAATTNCAAGCTAT
TCATATCCTGATTATAATTGCTTCTAAAGTTATGCAAAAAAANANATNTAATTGTTAAGGGTTAAAGAATCACGTCCAAC
AGCAAATTGCTCTTTTTTTAAAAAAAAAATTGAGCGCATATGAGTAGCGTCAATCAAGAGATTGCTCAATATCCACACCA
AATATCGGGTGTATATATATGAGTCTTGTTTGTGTTTTCAATTTCTTTATATAGGTTGAGAAGATGTTTGTATCATNCCT
TCCATGTAATTTTTATTNTTGGATTCTGAATGTAATTCCTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27362.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis