Browse Element(s) Details


Os.27420.1.S2_s_at

Description gb:AK066626.1
DB_XREF= gi:32976644
TID=Os.27420.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27420 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013069L21, full insert sequence.
FL= gb:AK066626.1 gb:AK106224.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1760411/11SHR5-receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g17560OsAffx.10020.1.S1_x_at1/115+10067102..10067949retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17570Os.45173.1.S1_x_at2/115+10069172..10075965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17580Os.24831.3.S1_s_at11/115+10078221..10081021retrotransposon protein, putative, unclassified
LOC_Os05g17580Os.24831.1.S1_x_at11/115+10078221..10081021retrotransposon protein, putative, unclassified
LOC_Os05g17580Os.24831.3.S1_x_at8/115+10078221..10081021retrotransposon protein, putative, unclassified
LOC_Os05g17580Os.53142.1.S1_at2/115+10078221..10081021retrotransposon protein, putative, unclassified
LOC_Os05g17580Os.24831.4.S1_x_at1/115+10078221..10081021retrotransposon protein, putative, unclassified
LOC_Os05g17580Os.23706.1.A1_x_at1/115+10078221..10081021retrotransposon protein, putative, unclassified
LOC_Os05g17590OsAffx.22896.1.S1_x_at2/115+10081536..10084189retrotransposon protein, putative, unclassified
LOC_Os05g17590Os.45721.1.S1_x_at1/115+10081536..10084189retrotransposon protein, putative, unclassified
LOC_Os05g17604Os.27420.1.S1_at11/115+10091684..10105526SHR5-receptor-like kinase, putative, expressed
LOC_Os05g17604OsAffx.14742.1.S1_s_at11/115+10091684..10105526SHR5-receptor-like kinase, putative, expressed
LOC_Os05g17604Os.27420.1.S2_s_at11/115+10091684..10105526SHR5-receptor-like kinase, putative, expressed
LOC_Os05g17604OsAffx.26937.1.S1_x_at10/115+10091684..10105526SHR5-receptor-like kinase, putative, expressed
LOC_Os05g17604Os.27420.2.A1_s_at8/115+10091684..10105526SHR5-receptor-like kinase, putative, expressed
LOC_Os05g17604OsAffx.26937.4.S1_x_at4/115+10091684..10105526SHR5-receptor-like kinase, putative, expressed
LOC_Os05g17604OsAffx.14742.1.S1_x_at3/115+10091684..10105526SHR5-receptor-like kinase, putative, expressed
LOC_Os05g17620NANA5+10116838..10118905hypothetical protein
LOC_Os05g17630OsAffx.22947.1.S1_x_at1/115+10121633..10128643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17630Os.23638.1.A1_x_at1/115+10121633..10128643retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27420.1.S2_s_at--382--10571Chr05:10094649..10094673 (25 bp)
TTCTTACTCGATACCACCAGTGAAA
LOC_Os05g17604
Os.27420.1.S2_s_at--105--10451Chr05:10094648..10094670 (23 bp)
TTACTCGATACCACCAGTGAAAGTA
LOC_Os05g17604
Os.27420.1.S2_s_at--850--9371Chr05:10094553..10094666 (25 bp)
TCGATACCACCAGTGAAAGTACGCT
LOC_Os05g17604
Os.27420.1.S2_s_at--239--291Chr05:10094550..10094663 (25 bp)
ATACCACCAGTGAAAGTACGCTACC
LOC_Os05g17604
Os.27420.1.S2_s_at--925--1951Chr05:10094363..10094387 (25 bp)
ACTGTGGCAGTAATGCATCCATAAG
LOC_Os05g17604
Os.27420.1.S2_s_at--837--8251Chr05:10094358..10094382 (25 bp)
GGCAGTAATGCATCCATAAGAGGCT
LOC_Os05g17604
Os.27420.1.S2_s_at--77--7071Chr05:10094354..10094378 (25 bp)
GTAATGCATCCATAAGAGGCTCAGA
LOC_Os05g17604
Os.27420.1.S2_s_at--248--631Chr05:10094351..10094375 (25 bp)
ATGCATCCATAAGAGGCTCAGATGA
LOC_Os05g17604
Os.27420.1.S2_s_at--701--10071Chr05:10094248..10094272 (25 bp)
TAGTGTAGGGAACGCCATAGATGCA
LOC_Os05g17604
Os.27420.1.S2_s_at--1070--4371Chr05:10094089..10094113 (25 bp)
CCAATTCGCAGAATTAGCTTTTCCA
LOC_Os05g17604
Os.27420.1.S2_s_at--748--4111Chr05:10094083..10094107 (25 bp)
CGCAGAATTAGCTTTTCCAGACTCA
LOC_Os05g17604
Target Sequence 
TTCTTACTCGATACCACCAGTGAAAGTACGCTACCTTGGGGAATAAACTGCCTCCAACAAGACACCCCTTGTTTCCGTGG
ATCTCCAGAATATTATTCCTTCGCAGTTGACTGTGGCAGTAATGCATCCATAAGAGGCTCAGATGACACTATTTATGAAG
CAGATCCTACAAATCTTGGAGCTGCAACATATTATGTTACCGGTCAAACAAGATGGGGTGTCAGTAGTGTAGGGAACGCC
ATAGATGCAAAGAATATTATATATAGCTCCCAACCTTTTCAAAATGTAGTTGATTCAGAGTTGTTTGAAACTGCAAGGAT
GTCATCATCATCTCTGAGGTACTATGGACTTGGACTTGAGAANTGGAAATTACACTGTTTTGCTCCAATTCGCAGAATTA
GCTTTTCCAGACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27420.1.S2_s_at     

Putative homologies in rice

Putative homologies in arabidopsis