Browse Element(s) Details


Os.27485.1.S1_at

Description gb:AK066423.1
DB_XREF= gi:32976441
TID=Os.27485.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27485 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013061P19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013061P19, full insert sequence.
FL= gb:AK066423.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g586201/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58560OsAffx.24925.1.S1_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560OsAffx.24925.1.S1_x_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.50372.1.S2_x_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.17864.1.S1_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.38768.1.A1_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.50372.1.S1_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.38768.1.A1_s_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58570Os.19421.1.S1_at11/112+35798862..35800671PRLI-interacting factor A, putative, expressed
LOC_Os02g58580Os.38243.1.S1_at11/112+35801176..35806577Metal tolerance protein C2, putative, expressed
LOC_Os02g58580Os.8441.1.S1_s_at11/112+35801176..35806577Metal tolerance protein C2, putative, expressed
LOC_Os02g58580Os.8441.1.S1_at11/112+35801176..35806577Metal tolerance protein C2, putative, expressed
LOC_Os02g58590NANA2+35808178..35812308GNT-I family protein, expressed
LOC_Os02g58600Os.22510.1.A1_at1/112+35813605..35814421hypothetical protein
LOC_Os02g58610Os.54945.1.S1_at11/112+35815834..35817102Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os02g58620Os.27485.1.S1_at1/112+35817332..35823762MATE efflux family protein, expressed
LOC_Os02g58630OsAffx.12692.1.S1_at11/112+35828589..35829224hypothetical protein
LOC_Os02g58640Os.17833.1.S1_at11/112+35830932..35832496Tumour susceptibility gene 101 protein containing protein, expressed
LOC_Os02g58650Os.5975.1.S2_at11/112+35834220..35839271expressed protein
LOC_Os02g58650Os.5975.1.S1_at10/112+35834220..35839271expressed protein
LOC_Os02g58660Os.53860.1.S1_at11/112+35841745..35844727Sodium/hydrogen exchanger family protein, expressed
LOC_Os02g58670Os.18354.1.S1_at11/112+35847649..35848822bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27485.1.S1_at--18--2051Chr02:35823723..35823747 (25 bp)
ACTTATGGGATTGCGCATGGCTTCG
LOC_Os02g58620
Os.27485.1.S1_at--192--3991NONE
CGGGCATTCTCAGGCTTCTATGGAA
NONE
Os.27485.1.S1_at--799--7851Chr02:35825176..35825200 (25 bp)
GGTATTTATGTTCAAGTCGGTCTGC
NONE
Os.27485.1.S1_at--258--7191Chr02:35825191..35825215 (25 bp)
GTCGGTCTGCTAGGAGATGCCATTT
NONE
Os.27485.1.S1_at--293--591Chr02:35825207..35825231 (25 bp)
ATGCCATTTTTACTTGCTACCAACA
NONE
Os.27485.1.S1_at--856--2291Chr02:35825281..35825305 (25 bp)
AAAGGCTCCCTTGTTTCTTGTGGTG
NONE
Os.27485.1.S1_at--899--9571Chr02:35825296..35825320 (25 bp)
TCTTGTGGTGGTTTTCGTTTACTGT
NONE
Os.27485.1.S1_at--1083--7051Chr02:35825321..35825345 (25 bp)
GTAAGCCAGTTTGCTGCTGCGTAAA
NONE
Os.27485.1.S1_at--998--3311Chr02:35825372..35825396 (25 bp)
GAATTTGCCTTTCTTTAACCTGAGA
NONE
Os.27485.1.S1_at--267--9791Chr02:35825387..35825411 (25 bp)
TAACCTGAGACCACTTCGAATTATT
NONE
Os.27485.1.S1_at--27--8411Chr02:35825455..35825476 (22 bp)
GGCCCTACGTAGCATTGTCCTAAAA
NONE
Target Sequence 
ACTTATGGGATTGCGCATGGCTTCGGGCATTCTCAGGCTTCTATGGAAATCAGGACCTTGGTCATTTTTGCATGAGGAAC
CCAAAACAGAGCTAGCTGGTTGAAGATGGAGCGGCAACTAAGCAGTCAATACTACGGATTAAATGAACGAGCGGGTGATT
CTGTAGGTATTTATGTTCAAGTCGGTCTGCTAGGAGATGCCATTTTTACTTGCTACCAACATTGTTCAATTGCTAGTGTT
ATTACTATGTGTAGCCGTTTTATTTATTCTAAAGGCTCCCTTGTTTCTTGTGGTGGTTTTCGTTTACTGTGTAAGCCAGT
TTGCTGCTGCGTAAACAGCTTGATAAGTTTAGAAGGATAGAGAATTTGCCTTTCTTTAACCTGAGACCACTTCGAATTAT
TTTTGGAGCAATGTATACTAATACTGTATTATTCAGTTCAAAGGGGCCCTACGTAGCATTGTCCTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis