Browse Element(s) Details


Os.27533.1.S1_a_at

Description gb:AK066058.1
DB_XREF= gi:32976076
TID=Os.27533.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27533 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013115O15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050C14, full insert sequence.
FL= gb:AK066058.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2098011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20940OsAffx.25173.1.S1_at11/113+11857073..11860577QXW lectin repeat family protein
LOC_Os03g20949OsAffx.3286.1.S1_x_at11/113+11862629..11863722Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20949Os.25243.1.A1_at11/113+11862629..11863722Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20958Os.57287.1.S1_at10/113+11864292..11867720Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20970Os.26655.1.S1_at11/113+11871980..11877061Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20970Os.26655.2.S1_x_at11/113+11871980..11877061Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20980Os.27533.1.S1_a_at11/113+11881656..11886194expressed protein
LOC_Os03g20990OsAffx.12961.1.S1_at11/113+11895521..11896299hypothetical protein
LOC_Os03g21000Os.5830.1.S1_at11/113+11898085..11900185Thioredoxin-like 1, putative, expressed
LOC_Os03g21000OsAffx.12962.1.S1_at11/113+11898085..11900185Thioredoxin-like 1, putative, expressed
LOC_Os03g21010OsAffx.27944.1.S1_at10/113+11902526..11902789hypothetical protein
LOC_Os03g21010OsAffx.27944.1.S1_x_at9/113+11902526..11902789hypothetical protein
LOC_Os03g21020OsAffx.20881.1.S1_x_at11/113+11903304..11908550RNA recognition motif family protein, expressed
LOC_Os03g21020Os.55179.1.S1_at10/113+11903304..11908550RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27533.1.S1_a_at--362--3091Chr03:11882198..11882222 (25 bp)
AATAGTTTCTCTCTTGGTGGTTCTG
LOC_Os03g20980
Os.27533.1.S1_a_at--183--7711Chr03:11882174..11882198 (25 bp)
GGTGGAAGTACCAGCGCAAATCCTT
LOC_Os03g20980
Os.27533.1.S1_a_at--911--3031Chr03:11882156..11882180 (25 bp)
AATCCTTCTCGTAGTGATCATGGCT
LOC_Os03g20980
Os.27533.1.S1_a_at--1081--5971Chr03:11882127..11882151 (25 bp)
GAGAAATCAGTCTGCCCTTGTGGCA
LOC_Os03g20980
Os.27533.1.S1_a_at--478--7531Chr03:11882095..11882119 (25 bp)
GTGGCACGATGTTCCGAAACCGTTT
LOC_Os03g20980
Os.27533.1.S1_a_at--573--5771Chr03:11881973..11881997 (25 bp)
GACGATCGTCAACAGCCGAAAGCCT
LOC_Os03g20980
Os.27533.1.S1_a_at--888--531Chr03:11881911..11881935 (25 bp)
ATCGCGCGATTATAATGTGCCCTGC
LOC_Os03g20980
Os.27533.1.S1_a_at--715--4511Chr03:11881876..11881900 (25 bp)
GCCCCTGTTTAATCGAGTGTGTCAA
LOC_Os03g20980
Os.27533.1.S1_a_at--372--10871Chr03:11881754..11881778 (25 bp)
TTGGACTGGAGTTCGCCTTGCATGT
LOC_Os03g20980
Os.27533.1.S1_a_at--430--8251Chr03:11881729..11881753 (25 bp)
GGCACCATAATTATGCTCTCGGCAT
LOC_Os03g20980
Os.27533.1.S1_a_at--785--6871Chr03:11881688..11881712 (25 bp)
GTATTGACAACTATCTCTTCGGCTT
LOC_Os03g20980
Target Sequence 
AATAGTTTCTCTCTTGGTGGTTCTGGTGGAAGTACCAGCGCAAATCCTTCTCGTAGTGATCATGGCTTGAAGAGAAATCA
GTCTGCCCTTGTGGCAAGACGCANGTGGCACGATGTTCCGAAACCGTTTTAAGAAGCAGTTNTCCTTCAAGGGGAGGTTT
GGGAAAGATCTCTTCGGTGGTAGAGTTTTCAAGAAGGTTGGATCATCGTCTTNTTCAGGTCAACAGGACGATCGTCAACA
GCCGAAAGCCTGACTGAAAAAAAAAATACATGAAGTAGCTAGTATGAAATCGCGCGATTATAATGTGCCCTGCTGCTACT
CTAGCCCCTGTTTAATCGAGTGTGTCAAGAAGTCGTAGTCCATGTATAATTTATGATAGAAGGTGAAATTCTGTATGCAT
GCGGCCCTGCGCTAGCACTTATTAGGTGGTGGTGTTTTTGTTTTGTTGGACTGGAGTTCGCCTTGCATGTGGCACCATAA
TTATGCTCTCGGCATGAATGCTTACTGTTAAGTATTGACAACTATCTCTTCGGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27533.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis