Browse Element(s) Details


Os.27552.2.S1_at

Description gb:AK107200.1
DB_XREF= gi:32992409
TID=Os.27552.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27552 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative GTP-binding protein (P0498E12.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-B02, full insert sequence.
FL= gb:AK107200.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0622011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06170Os.32498.1.S1_at11/118+3401932..3403624Reticuline oxidase precursor, putative, expressed
LOC_Os08g06180OsAffx.16849.1.S1_at11/118+3405986..3407050Reticuline oxidase precursor, putative
LOC_Os08g06190OsAffx.21988.1.S1_at11/118+3409139..3410827Reticuline oxidase precursor, putative, expressed
LOC_Os08g06200Os.33271.1.S1_a_at11/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06200Os.33271.2.S1_x_at10/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06200Os.26733.3.S1_x_at1/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06210Os.53407.1.S1_x_at10/118+3419392..3421715expressed protein
LOC_Os08g06210Os.53407.1.S1_at10/118+3419392..3421715expressed protein
LOC_Os08g06210Os.34200.1.S1_x_at6/118+3419392..3421715expressed protein
LOC_Os08g06210Os.7750.1.S1_at1/118+3419392..3421715expressed protein
LOC_Os08g06220Os.27552.2.S1_at11/118+3424561..3425998hypothetical protein
LOC_Os08g06230Os.27552.1.S1_a_at11/118+3425810..3431881Nucleolar GTP-binding protein 1 containing protein, expressed
LOC_Os08g06240Os.11238.1.S1_at11/118+3432104..3435526Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g06250Os.7243.1.S1_s_at11/118+3437118..3440602GMFP4, putative, expressed
LOC_Os08g06260OsAffx.16851.1.S1_x_at11/118+3441439..3441675hypothetical protein
LOC_Os08g06260OsAffx.16851.1.S1_at11/118+3441439..3441675hypothetical protein
LOC_Os08g06270OsAffx.21987.1.S1_x_at11/118+3443989..3444219hypothetical protein
LOC_Os08g06270OsAffx.21987.1.S1_at11/118+3443989..3444219hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27552.2.S1_at--1052--2271Chr08:3425451..3425475 (25 bp)
AAATGCTGACTCAACTGCCAGTGAA
LOC_Os08g06220
Os.27552.2.S1_at--1046--6911Chr08:3425535..3425559 (25 bp)
GTAGAATGCCTGTTTTTCGAATTTA
LOC_Os08g06220
Os.27552.2.S1_at--189--3671Chr08:3425576..3425600 (25 bp)
CTTTTCCTTCTCCATATAGCAGTTG
LOC_Os08g06220
Os.27552.2.S1_at--1140--7671Chr08:3425601..3425625 (25 bp)
GGGTTTCTCAAACAATCCGCCATCG
LOC_Os08g06220
Os.27552.2.S1_at--95--8891Chr08:3425627..3425651 (25 bp)
TGATGGCCTGATGCGAGTCCACTTC
LOC_Os08g06220
Os.27552.2.S1_at--267--10571Chr08:3425649..3425673 (25 bp)
TTCTTCTGCTCCTCATCTGAAGTTA
LOC_Os08g06220
Os.27552.2.S1_at--1012--10451Chr08:3425671..3425695 (25 bp)
TTAATCGAAGACACAACCAGCCCTA
LOC_Os08g06220
Os.27552.2.S1_at--228--4191Chr08:3425691..3425715 (25 bp)
CCCTAGTAGGGCCTTGTTGCATGTA
LOC_Os08g06220
Os.27552.2.S1_at--752--2313Chr08:3425729..3425753 (25 bp)
AAAGGGTCTGTTCACTTTGCTGCCA
LOC_Os08g06220
Os.27552.2.S1_at--1105--9531Chr08:3425955..3425979 (25 bp)
TTTCTCCTTCCGTACAAAATTCCAG
LOC_Os08g06220
Os.27552.2.S1_at--725--10611Chr08:3425974..3425998 (25 bp)
TTCCAGGTACTACTACATTAGATGC
LOC_Os08g06220
Target Sequence 
AAATGCTGACTCAACTGCCAGTGAATCCAAAACTACTCCGGATTGAGTAGGGGGGTTATTTATTCGGTTTCAATAATTGA
GGATGTAGAATGCCTGTTTTTCGAATTTAGGGGGGTAATTCGTACCTTTTCCTTCTCCATATAGCAGTTGGGGTTTCTCA
AACAATCCGCCATCGCTGATGGCCTGATGCGAGTCCACTTCTTCTGCTCCTCATCTGAAGTTAATCGAAGACACAACCAG
CCCTAGTAGGGCCTTGTTGCATGTAAAAGCTGCATGTGAAAGGGTCTGTTCACTTTGCTGCCATTTTCAACCTTATCAAA
TTTTGGTAAAGTTGTTAAAAAAGTAGCTACATTTAGTTTGCTACCAAATTTTGGTAACTATATAAGAAATCATGTCAAAA
TTTTGACAAGTTCGCCAAAATTTTGGCAACTATACCAAAATTTGGCAATGCCAAAATTTAGTAAGGTTTTTTTTTTTTTT
TCATCAAAGTGAACAGGCCCAAAATTTTCTCCTTCCGTACAAAATTCCAGGTACTACTACATTAGATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27552.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis