Browse Element(s) Details


Os.27561.1.S2_at

Description gb:AK066421.1
DB_XREF= gi:32976439
TID=Os.27561.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27561 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059J24, full insert sequence.
FL= gb:AK066421.1 gb:AK060768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0813011/11ribitol kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08100Os.10669.1.S1_at11/112+4280499..42859264-coumarate-CoA ligase 1, putative, expressed
LOC_Os02g08110Os.50143.1.S1_at10/112+4286996..4288826plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os02g08120Os.17215.1.S2_at11/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08120Os.17215.1.S1_at11/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08120Os.51521.1.S1_at1/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08130Os.27561.1.S1_at11/112+4302087..4309652ribitol kinase, putative, expressed
LOC_Os02g08130Os.27561.1.S2_at11/112+4302087..4309652ribitol kinase, putative, expressed
LOC_Os02g08140Os.49797.1.A1_at11/112+4306571..4309936Protein kinase domain containing protein, expressed
LOC_Os02g08150Os.13999.1.S1_at11/112+4315280..4316957CONSTANS-like protein CO7, putative, expressed
LOC_Os02g08160OsAffx.11937.1.S1_at11/112+4320543..4323883F-box domain containing protein, expressed
LOC_Os02g08170OsAffx.11938.1.S1_at2/112+4326072..4326885hypothetical protein
LOC_Os02g08170OsAffx.11938.1.S1_x_at1/112+4326072..4326885hypothetical protein
LOC_Os02g08180Os.10116.1.S1_at1/112+4332352..4332667Protein transport protein SEC61 gamma subunit, putative, expressed
LOC_Os02g08190Os.6022.1.S1_at10/112+4334607..4338099Protein CYPRO4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0019200molecular_functioncarbohydrate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27561.1.S2_at--126--8911Chr02:4309062..4309086 (25 bp)
TGAGATCTCTGTGGTAGACACCTCT
LOC_Os02g08130
Os.27561.1.S2_at--273--10031Chr02:4309076..4309100 (25 bp)
TAGACACCTCTCCTATGGCAGTAGT
LOC_Os02g08130
Os.27561.1.S2_at--252--8271Chr02:4309092..4309116 (25 bp)
GGCAGTAGTCTACAGCATCAATCAA
LOC_Os02g08130
Os.27561.1.S2_at--475--7851Chr02:4309119..4309143 (25 bp)
GGTAGAAATACTTCTTCGCTTCCTT
LOC_Os02g08130
Os.27561.1.S2_at--208--651Chr02:4309256..4309280 (25 bp)
ATGCATGATGTCTTACTAGCTTGTC
LOC_Os02g08130
Os.27561.1.S2_at--624--2031Chr02:4309270..4309294 (25 bp)
ACTAGCTTGTCAGATAGCTGCCCTC
LOC_Os02g08130
Os.27561.1.S2_at--513--151Chr02:4309309..4309333 (25 bp)
ATTACCAGGCATATCTTCGTCTTCG
LOC_Os02g08130
Os.27561.1.S2_at--55--10631Chr02:4309330..4309354 (25 bp)
TTCGTCGCGATCACCTGCACAGGAA
LOC_Os02g08130
Os.27561.1.S2_at--691--10171Chr02:4309362..4309386 (25 bp)
TATAATATAATCCTCCATTCCTCCT
LOC_Os02g08130
Os.27561.1.S2_at--980--6471Chr02:4309401..4309425 (25 bp)
GATACGGCTGAAACCCTGATGCTGA
LOC_Os02g08130
Os.27561.1.S2_at--1115--10531Chr02:4309493..4309517 (25 bp)
TTCATGGCCGTGATCTCTCTTTTGA
LOC_Os02g08130
Target Sequence 
TGAGATCTCTGTGGTAGACACCTCTCCTATGGCAGTAGTCTACAGCATCAATCAATTGGTAGAAATACTTCTTCGCTTCC
TTCTCATCCANCCTCTTGAGGTAACTCTTAAACCCAGAAGAAAAGAAAGATCAGGAATTGCAAGAAAAATTAGCTGAGTT
AATCAGACTAGAATTACATGCTGGTTAATTGATTATGCATGATGTCTTACTAGCTTGTCAGATAGCTGCCCTCCTGNGAC
ATACTCCATTACCAGGCATATCTTCGTCTTCGTCGCGATCACCTGCACAGGAAGAAAAGGTATAATATAATCCTCCATTC
CTCCTGAAACCCTGATGCTGATACGGCTGAAACCCTGATGCTGATACGGGTAATTAGTAACCAAGCTTAATCACCTCATA
TATCTTGACAATGTTGGGGTGGTTGAGGAGCTTCATGGCCGTGATCTCTCTTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27561.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis