Browse Element(s) Details


Os.27705.1.S1_a_at

Description gb:AK102252.1
DB_XREF= gi:32987461
TID=Os.27705.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27705 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0498A12.24 (P0498A12.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088H11, full insert sequence.
FL= gb:AK102252.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1829011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18260Os.47463.1.S1_x_at6/111+10244863..10248561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18260Os.14491.2.S1_x_at5/111+10244863..10248561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270Os.27037.1.A1_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270OsAffx.8160.1.S1_x_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270Os.50196.2.S1_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18280OsAffx.31543.1.S1_x_at11/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.1.S1_at10/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.2.S1_x_at10/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.2.S1_at9/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18290Os.27705.1.S1_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.1.S1_a_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.3.S1_at2/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18300OsAffx.22253.2.S1_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18300OsAffx.22253.2.S1_s_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18310Os.57179.1.S1_at5/111+10285754..10286422hypothetical protein
LOC_Os01g18310OsAffx.21147.1.S1_at1/111+10285754..10286422hypothetical protein
LOC_Os01g18320Os.5439.1.S1_a_at11/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18320OsAffx.20253.1.S1_x_at2/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18330OsAffx.23288.1.S1_at11/111+10294491..10294817hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0009639biological_processresponse to red or far red light
GO:0010017biological_processred or far red light signaling pathway
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27705.1.S1_a_at--49--7711Chr01:10268579..10268603 (25 bp)
GGGTCCCTCAAGTATCAGGCGCCAT
LOC_Os01g18290
Os.27705.1.S1_a_at--934--4271Chr01:10268574..10268598 (25 bp)
CCTCAAGTATCAGGCGCCATGGCTA
LOC_Os01g18290
Os.27705.1.S1_a_at--432--1191Chr01:10268569..10268593 (25 bp)
AGTATCAGGCGCCATGGCTAACATG
LOC_Os01g18290
Os.27705.1.S1_a_at--912--891Chr01:10268563..10268587 (25 bp)
AGGCGCCATGGCTAACATGGTGCAA
LOC_Os01g18290
Os.27705.1.S1_a_at--911--4411Chr01:10268559..10268583 (25 bp)
GCCATGGCTAACATGGTGCAAGACC
LOC_Os01g18290
Os.27705.1.S1_a_at--562--3271Chr01:10268532..10268556 (25 bp)
CAACAAGGCATAGCGAATCAACAGC
LOC_Os01g18290
Os.27705.1.S1_a_at--49--8291Chr01:10268526..10268550 (25 bp)
GGCATAGCGAATCAACAGCAGCAAT
LOC_Os01g18290
Os.27705.1.S1_a_at--848--5231Chr01:10268518..10268542 (25 bp)
GAATCAACAGCAGCAATGTCTGAAC
LOC_Os01g18290
Os.27705.1.S1_a_at--378--8191Chr01:10268491..10268515 (25 bp)
GGAAGCTATACAGGGAGCAAATCCA
LOC_Os01g18290
Os.27705.1.S1_a_at--904--4331Chr01:10268469..10268493 (25 bp)
CCAGGTGATTCACAAATGCAGATCA
LOC_Os01g18290
Os.27705.1.S1_a_at--159--6572Chr01:30365310..30365788 (25 bp)
GATTCACAAATGCAGATCATCATGC
NONE
Target Sequence 
GGGTCCCTCAAGTATCAGGCGCCATGGCTAACATGGTGCAAGACCAGCAACAAGGCATAGCGAATCAACAGCAGCAATGT
CTGAACAAGGAAGCTATACAGGGAGCAAATCCAGGTGATTCACAAATGCAGATCATCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27705.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis