Browse Element(s) Details


Os.27705.3.S1_at

Description gb:NM_187735.1
DB_XREF= gi:34902555
GEN=P0498A12.24
TID=Os.27705.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27705 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0498A12.24 (P0498A12.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0498A12.24 (P0498A12.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g182902/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18260Os.47463.1.S1_x_at6/111+10244863..10248561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18260Os.14491.2.S1_x_at5/111+10244863..10248561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270Os.27037.1.A1_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270OsAffx.8160.1.S1_x_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18270Os.50196.2.S1_at1/111+10251604..10257390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18280OsAffx.31543.1.S1_x_at11/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.1.S1_at10/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.2.S1_x_at10/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.2.S1_at9/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18290Os.27705.1.S1_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.1.S1_a_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.3.S1_at2/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18300OsAffx.22253.2.S1_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18300OsAffx.22253.2.S1_s_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18310Os.57179.1.S1_at5/111+10285754..10286422hypothetical protein
LOC_Os01g18310OsAffx.21147.1.S1_at1/111+10285754..10286422hypothetical protein
LOC_Os01g18320Os.5439.1.S1_a_at11/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18320OsAffx.20253.1.S1_x_at2/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18330OsAffx.23288.1.S1_at11/111+10294491..10294817hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0009639biological_processresponse to red or far red light
GO:0010017biological_processred or far red light signaling pathway
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27705.3.S1_at--821--191Chr01:10268837..10268861 (25 bp)
ATTTCCCTCATCTCGGCATGGGATT
LOC_Os01g18290
Os.27705.3.S1_at--354--4391Chr01:10268646..10268754 (25 bp)
CCAATGATCCCAGCGTCTAGTGTAC
LOC_Os01g18290
Os.27705.3.S1_at--468--1271NONE
AGATCATCATGCAGCGCTTTCTGGT
NONE
Os.27705.3.S1_at--38--3531Chr01:10267805..10267825 (21 bp)
CATGCAGCGCTTTCTGGTGCAAATA
NONE
Os.27705.3.S1_at--11--6331Chr01:10267778..10267802 (25 bp)
GATGAATTATTATGACACAGTTGTT
NONE
Os.27705.3.S1_at--67--6831NONE
GTTTATGCTTACAAGTTTGTTAGCT
NONE
Os.27705.3.S1_at--1034--1191Chr01:10266590..10266784 (25 bp)
AGTTTGTTAGCTTAGTTCGATCTCA
NONE
Os.27705.3.S1_at--986--4891Chr01:10266581..10266605 (25 bp)
GCTTAGTTCGATCTCAAGATGTCAT
NONE
Os.27705.3.S1_at--724--6271Chr01:10266564..10266588 (25 bp)
GATGTCATCTTTAAGTCTGTCAGCA
NONE
Os.27705.3.S1_at--85--7191Chr01:10266550..10266574 (25 bp)
GTCTGTCAGCAACTATGTATGCCCT
NONE
Os.27705.3.S1_at--8--3711Chr01:10266538..10266562 (25 bp)
CTATGTATGCCCTGATCATCTACAG
NONE
Target Sequence 
ATTTCCCTCATCTCGGCATGGGATTGGGGTACGGGATGGGCGTCTTCGACATGAGCAACACTGGAGCACTTCAGATGCCA
CCCATGCCTGGTGCTCACTTTCCCTGCCCAATGATCCCAGCGTCTAGTGTACCACCATTTGCATCTTTGGCTGGTCTTCC
TGTTAGGCCAAGCGGGGTCCCTCAAGTATCAGGCGCCATGGCTAACATGGTGCAAGACCAGCAACAAGGCATAGCGAATC
AACAGCAGCAATGTCTGAACAAGGAAGCTATACAGGGAGCAAATCCAGGTGATTCACAAATGCAGATCATCATGCAGCGC
TTTCTGGTGCAAATAATGATGAATTATTATGACACAGTTGTTTATGCTTACAAGTTTGTTAGCTTAGTTCGATCTCAAGA
TGTCATCTTTAAGTCTGTCAGCAACTATGTATGCCCTGATCATCTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27705.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis