Browse Element(s) Details


Os.27724.2.A1_a_at

Description gb:CB624182
DB_XREF= gi:29619170
DB_XREF=OSIIEa12H20.r
CLONE=OSIIEa12H20
TID=Os.27724.2
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27724 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_190648.1 (A.thaliana) putative LEA protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4334010/11Embryogenesis-associated protein EMB8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43314Os.54896.1.S1_at11/112+26120238..26121290expressed protein
LOC_Os02g43320OsAffx.14914.2.S1_x_at11/112+26129611..26129890hypothetical protein
LOC_Os02g43320OsAffx.14914.1.S1_x_at1/112+26129611..26129890hypothetical protein
LOC_Os02g43330Os.49245.1.S1_at11/112+26137450..26138780Homeobox domain containing protein, expressed
LOC_Os02g43340Os.27724.2.A1_a_at10/112+26140729..26145469Embryogenesis-associated protein EMB8, putative, expressed
LOC_Os02g43340OsAffx.26001.3.S1_x_at2/112+26140729..26145469Embryogenesis-associated protein EMB8, putative, expressed
LOC_Os02g43350Os.26686.1.S1_a_at11/112+26150407..26156564ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os02g43360Os.5542.1.S1_at11/112+26157254..26158352Cytochrome b5, putative, expressed
LOC_Os02g43370OsAffx.2947.1.S1_at11/112+26165748..26169049transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0003824molecular_functioncatalytic activity
GO:0008487molecular_functionprenyl-dependent CAAX protease activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27724.2.A1_a_at--4--8371Chr02:26141977..26142001 (25 bp)
GGCGGATAATGACCCAATTGCACCA
LOC_Os02g43340
Os.27724.2.A1_a_at--693--1251NONE
AGATATCAAGGCGAACCCGAACTGC
NONE
Os.27724.2.A1_a_at--36--9191Chr02:26141323..26141347 (25 bp)
TGCCTACTGATAGTAACACCACAGG
LOC_Os02g43340
Os.27724.2.A1_a_at--174--2811Chr02:26141271..26141295 (25 bp)
AAGATGCTCCATTTGGATGCCCTTG
LOC_Os02g43340
Os.27724.2.A1_a_at--969--151Chr02:26141255..26141279 (25 bp)
ATGCCCTTGGACTGACCCAATTATA
LOC_Os02g43340
Os.27724.2.A1_a_at--1134--6951Chr02:26141190..26141214 (25 bp)
GTACCAAGGGTAGCATCTCATATGA
LOC_Os02g43340
Os.27724.2.A1_a_at--76--6131Chr02:26141159..26141183 (25 bp)
GAGTGTTACACAAACGTCAGCCCCA
LOC_Os02g43340
Os.27724.2.A1_a_at--413--4631Chr02:26141114..26141138 (25 bp)
GCGATAGTAACGTTTCTCTTGCCAG
LOC_Os02g43340
Os.27724.2.A1_a_at--1051--10311Chr02:26141102..26141126 (25 bp)
TTTCTCTTGCCAGATTTTTCCATTC
LOC_Os02g43340
Os.27724.2.A1_a_at--939--7371Chr02:26140880..26140904 (25 bp)
GTGACGATATTGTCGCGGCCTGCAG
LOC_Os02g43340
Os.27724.2.A1_a_at--355--8431Chr02:26140864..26140888 (25 bp)
GGCCTGCAGTCTGGGATTCTTTACA
LOC_Os02g43340
Target Sequence 
GGCGGATAATGACCCAATTGCACCATCTAGGGGAATTCCCTGTGAAGATATCAAGGCGAACCCGAACTGCCTACTGATAG
TAACACCACAGGGTGGTCCCCTTGGATGGGTGGCAGGTGAAGATGCTCCATTTGGATGCCCTTGGACTGACCCAATTATA
ATGGAGTTTGTAGAATATGTTCATAACGAAAAGAACTCTAGTACCAAGGGTAGCATCTCATATGAGCAGCAGAGTGTTAC
ACAAACGTCAGCCCCAGATGTCTCTGTGCATGTGCAGCGATAGTAACGTTTCTCTTGCCAGATTTTTCCATTCTCTAGGC
ATGTCTTGTGCACATAGTTGTTAGGTCGAGATGCTTTTCAGTGCTCCAGGATGACAGGTACATGATCAAATTTCATGCAC
CCCTAGTTTTGTTCCTAAGTATAAATATTTTCTGTTCTTCCATCAATAGTTTGATGAATATTGTTCGCTATGCCTCTGCT
TTACTTGTGCAGGTTGTACGTTATTGAGTTGTGACGATATTGTCGCGGCCTGCAGTCTGGGATTCTTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27724.2.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis