Browse Element(s) Details


Os.27778.2.S1_at

Description gb:AK068030.1
DB_XREF= gi:32978048
TID=Os.27778.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27778 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134K08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134K08, full insert sequence.
FL= gb:AK068030.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4000011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39950NANA1+22860762..22861298hypothetical protein
LOC_Os01g39960Os.24901.1.A1_at11/111+22861853..22865590Lycopene epsilon cyclase, chloroplast precursor, putative, expressed
LOC_Os01g39970Os.49687.1.S1_x_at11/111+22865845..22869073Protein kinase domain containing protein, expressed
LOC_Os01g39970Os.49687.1.S1_at11/111+22865845..22869073Protein kinase domain containing protein, expressed
LOC_Os01g39970OsAffx.15330.1.S1_x_at2/111+22865845..22869073Protein kinase domain containing protein, expressed
LOC_Os01g39980OsAffx.32072.2.S1_x_at10/111+22870540..22872308hypothetical protein
LOC_Os01g39980OsAffx.32072.2.S1_at10/111+22870540..22872308hypothetical protein
LOC_Os01g39980OsAffx.32072.1.S1_x_at6/111+22870540..22872308hypothetical protein
LOC_Os01g39980OsAffx.32072.1.S1_at3/111+22870540..22872308hypothetical protein
LOC_Os01g39990OsAffx.11397.1.S1_at11/111+22879915..22881313hypothetical protein
LOC_Os01g40000Os.27778.3.S1_x_at11/111+22884299..22888525expressed protein
LOC_Os01g40000Os.27778.2.S1_at11/111+22884299..22888525expressed protein
LOC_Os01g40010Os.46012.2.S1_x_at6/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.27088.1.A1_x_at6/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.46012.3.S1_x_at3/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.10263.1.S1_at2/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010OsAffx.727.1.S1_x_at2/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.45902.1.A1_x_at1/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010OsAffx.10222.1.S1_x_at1/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40020OsAffx.11398.1.S1_at11/111+22902308..22903684hypothetical protein
LOC_Os01g40030OsAffx.23591.1.S1_at11/111+22906323..22908661hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27778.2.S1_at--1001--2691Chr01:22884385..22884409 (25 bp)
AAGCTTTAGTTCTGCAATGATATGC
LOC_Os01g40000
Os.27778.2.S1_at--96--4891Chr01:22884383..22884407 (25 bp)
GCTTTAGTTCTGCAATGATATGCAT
LOC_Os01g40000
Os.27778.2.S1_at--1074--2992Chr09:22262363..22262391 (23 bp)
AATGATATGCATATGTTTTGCCTCA
NONE
Os.27778.2.S1_at--45--731Chr01:22884369..22884393 (25 bp)
ATGATATGCATATGTTTTGCCTCAG
LOC_Os01g40000
Os.27778.2.S1_at--503--8832Chr09:22787231..22787258 (23 bp)
TGATATGCATATGTTTTGCCTCAGC
NONE
Os.27778.2.S1_at--248--6512Chr09:22787230..22787258 (24 bp)
GATATGCATATGTTTTGCCTCAGCT
NONE
Os.27778.2.S1_at--180--271Chr01:22884366..22884390 (25 bp)
ATATGCATATGTTTTGCCTCAGCTG
LOC_Os01g40000
Os.27778.2.S1_at--772--10131Chr01:22884365..22884389 (25 bp)
TATGCATATGTTTTGCCTCAGCTGT
LOC_Os01g40000
Os.27778.2.S1_at--209--651Chr01:22884364..22884388 (25 bp)
ATGCATATGTTTTGCCTCAGCTGTT
LOC_Os01g40000
Os.27778.2.S1_at--118--9071Chr01:22884363..22884387 (25 bp)
TGCATATGTTTTGCCTCAGCTGTTT
LOC_Os01g40000
Os.27778.2.S1_at--1070--4951Chr01:22884362..22884386 (25 bp)
GCATATGTTTTGCCTCAGCTGTTTT
LOC_Os01g40000
Target Sequence 
AAGCTTTAGTTCTGCAATGATATGCATATGTTTTGCCTCAGCTGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27778.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis