Browse Element(s) Details


Os.27778.3.S1_x_at

Description gb:AK120147.1
DB_XREF= gi:37989770
TID=Os.27778.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27778 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134K08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013029E20, full insert sequence.
FL= gb:AK120147.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4000011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39950NANA1+22860762..22861298hypothetical protein
LOC_Os01g39960Os.24901.1.A1_at11/111+22861853..22865590Lycopene epsilon cyclase, chloroplast precursor, putative, expressed
LOC_Os01g39970Os.49687.1.S1_x_at11/111+22865845..22869073Protein kinase domain containing protein, expressed
LOC_Os01g39970Os.49687.1.S1_at11/111+22865845..22869073Protein kinase domain containing protein, expressed
LOC_Os01g39970OsAffx.15330.1.S1_x_at2/111+22865845..22869073Protein kinase domain containing protein, expressed
LOC_Os01g39980OsAffx.32072.2.S1_x_at10/111+22870540..22872308hypothetical protein
LOC_Os01g39980OsAffx.32072.2.S1_at10/111+22870540..22872308hypothetical protein
LOC_Os01g39980OsAffx.32072.1.S1_x_at6/111+22870540..22872308hypothetical protein
LOC_Os01g39980OsAffx.32072.1.S1_at3/111+22870540..22872308hypothetical protein
LOC_Os01g39990OsAffx.11397.1.S1_at11/111+22879915..22881313hypothetical protein
LOC_Os01g40000Os.27778.3.S1_x_at11/111+22884299..22888525expressed protein
LOC_Os01g40000Os.27778.2.S1_at11/111+22884299..22888525expressed protein
LOC_Os01g40010Os.46012.2.S1_x_at6/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.27088.1.A1_x_at6/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.46012.3.S1_x_at3/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.10263.1.S1_at2/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010OsAffx.727.1.S1_x_at2/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.45902.1.A1_x_at1/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010OsAffx.10222.1.S1_x_at1/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40020OsAffx.11398.1.S1_at11/111+22902308..22903684hypothetical protein
LOC_Os01g40030OsAffx.23591.1.S1_at11/111+22906323..22908661hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27778.3.S1_x_at--568--911Chr01:22884904..22884928 (25 bp)
AGGCTGATCACTTCTCAATTTTCGA
LOC_Os01g40000
Os.27778.3.S1_x_at--198--10611Chr01:22884884..22884908 (25 bp)
TTCGAGACATCACCAACTGTTCTAC
LOC_Os01g40000
Os.27778.3.S1_x_at--932--9531Chr01:22884864..22884888 (25 bp)
TCTACCGGTGGAATTCTCTTTTGAG
LOC_Os01g40000
Os.27778.3.S1_x_at--195--10771Chr01:22884844..22884868 (25 bp)
TTGAGGATTCTCCTGGGACTCCTAA
LOC_Os01g40000
Os.27778.3.S1_x_at--115--5271Chr01:22884777..22884801 (25 bp)
GAATGTTGGCATAAACCCCGCTGAA
LOC_Os01g40000
Os.27778.3.S1_x_at--1101--5871Chr01:22884750..22884774 (25 bp)
GAGCCCAGCAGTTCTGAAGCCTATA
LOC_Os01g40000
Os.27778.3.S1_x_at--457--3111Chr01:22884703..22884727 (25 bp)
AATATGTTGACCGATTGTCCCGCAG
LOC_Os01g40000
Os.27778.3.S1_x_at--316--1611Chr01:22884651..22884675 (25 bp)
AGCTGCAGGGTCCAAAGCTCTGGAT
LOC_Os01g40000
Os.27778.3.S1_x_at--130--1591Chr01:22884636..22884660 (25 bp)
AGCTCTGGATTCTGTCAAGACTCAA
LOC_Os01g40000
Os.27778.3.S1_x_at--886--3032Chr08:19490183..19490207 (23 bp)
AATCCCCTTGCGCATGTTGTAGAAG
NONE
Os.27778.3.S1_x_at--459--6471Chr01:22884451..22884475 (25 bp)
GATACTTGATTCGAAGCTGCCTGTT
LOC_Os01g40000
Target Sequence 
AGGCTGATCACTTCTCAATTTTCGAGACATCACCAACTGTTCTACCGGTGGAATTCTCTTTTGAGGATTCTCCTGGGACT
CCTAACAGTTCAGGGAAAAAACTGTTAGCAAGGTTGGAAACTGTAAAGAATGTTGGCATAAACCCCGCTGAACCGAGCCC
AGCAGTTCTGAAGCCTATAAAAAATGTTATCTTACATGAGAAATATGTTGACCGATTGTCCCGCAGAGAAGGCACAACAA
GGCCTCGTAAAAAAGCTGCAGGGTCCAAAGCTCTGGATTCTGTCAAGACTCAACAGGCAGGTGGTGTGAAGGCTGCAAGG
AATGCTCTCATCACAGAAGCAACAGACTTTATAAGCCATTTCAAGAAGATGCAAGCAAATCCCCTTGCGCATGTTGTAGA
AGACGACGAAGATGATGAGATTGATGGTATTGAGTGTGATACTAGCAATCATTGATACTTGATTCGAAGCTGCCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27778.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis