Browse Element(s) Details


Os.27834.1.S1_at

Description gb:CB646222
DB_XREF= gi:29641215
DB_XREF=OSJNEb08I13.r
CLONE=OSJNEb08I13
TID=Os.27834.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.27834 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_201420.1 (A.thaliana) ferredoxin-NADP+ reductase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g461101/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46060Os.17964.1.S1_at11/111+26510731..26516992expressed protein
LOC_Os01g46060Os.17964.2.S1_x_at10/111+26510731..26516992expressed protein
LOC_Os01g46070Os.12729.1.S1_at11/111+26517600..26521350Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g46080Os.54427.1.A1_at11/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.34087.4.S1_x_at2/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.21387.3.S1_x_at1/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.35566.1.A1_x_at1/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46090Os.34087.4.S1_x_at2/111+26530063..26533764GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46100OsAffx.10637.1.S1_s_at11/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100OsAffx.10637.3.S1_s_at11/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100OsAffx.10637.4.S1_s_at8/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100OsAffx.10637.2.S1_at1/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110OsAffx.32056.1.S1_x_at11/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110OsAffx.32056.1.S1_at11/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110OsAffx.30536.1.S1_x_at1/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110Os.27834.1.S1_at1/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110Os.27834.1.S1_x_at1/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46120Os.14232.1.S1_at11/111+26549465..26551967GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46120Os.34087.1.S1_x_at3/111+26549465..26551967GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46120Os.21387.3.S1_x_at1/111+26549465..26551967GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46130Os.34087.1.S1_x_at11/111+26557586..26561459expressed protein
LOC_Os01g46130Os.34087.3.S1_at10/111+26557586..26561459expressed protein
LOC_Os01g46130Os.21387.3.S1_x_at3/111+26557586..26561459expressed protein
LOC_Os01g46140Os.34087.2.A1_at11/111+26562616..26565132expressed protein
LOC_Os01g46140Os.34087.2.A1_x_at11/111+26562616..26565132expressed protein
LOC_Os01g46140Os.34087.4.S1_x_at7/111+26562616..26565132expressed protein
LOC_Os01g46140Os.27037.1.A1_at1/111+26562616..26565132expressed protein
LOC_Os01g46140Os.21387.2.S1_s_at1/111+26562616..26565132expressed protein
LOC_Os01g46140Os.35566.1.A1_x_at1/111+26562616..26565132expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27834.1.S1_at--1017--556Chr07:5434921..5434941 (21 bp)
ATCCAGTTTTATGGTTTAGGGTCAT
NONE
Os.27834.1.S1_at--58--6291Chr06:8666433..8666457 (25 bp)
GATTTCAATCACAGTTAAGGGTCAC
NONE
Os.27834.1.S1_at--180--3191Chr06:8666438..8666462 (25 bp)
CAATCACAGTTAAGGGTCACGATGT
NONE
Os.27834.1.S1_at--829--7692Chr06:8666451..8666475 (25 bp)
GGGTCACGATGTGAACTTATTCCTA
NONE
Os.27834.1.S1_at--75--10191Chr06:8666468..8666492 (25 bp)
TATTCCTAGATTTGGGTGTAAGCCC
NONE
Os.27834.1.S1_at--594--1251Chr06:8666475..8666499 (25 bp)
AGATTTGGGTGTAAGCCCATTAAGC
NONE
Os.27834.1.S1_at--197--4551Chr06:8666489..8666513 (25 bp)
GCCCATTAAGCCCAATAGAGCTAAG
NONE
Os.27834.1.S1_at--978--9791Chr06:8666495..8666519 (25 bp)
TAAGCCCAATAGAGCTAAGCTGAAA
NONE
Os.27834.1.S1_at--573--5911Chr06:8666506..8666530 (25 bp)
GAGCTAAGCTGAAAAGCAGCCCAAG
NONE
Os.27834.1.S1_at--301--5511Chr06:8666516..8666540 (25 bp)
GAAAAGCAGCCCAAGAAAACCAGGT
NONE
Os.27834.1.S1_at--597--4331Chr06:8666535..8666559 (25 bp)
CCAGGTTTTGCCTTTGTACAAACAT
NONE
Target Sequence 
ATCCAGTTTTATGGTTTAGGGTCATGGATTAGATTTCAATCACAGTTAAGGGTCACGATGTGAACTTATTCCTAGATTTG
GGTGTAAGCCCATTAAGCCCAATAGAGCTAAGCTGAAAAGCAGCCCAAGAAAACCAGGTTTTGCCTTTGTACAAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis