Browse Element(s) Details


Os.28012.1.S1_at

Description gb:AB109201.1
DB_XREF= gi:30314656
GEN=OsRFC5
TID=Os.28012.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.28012 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsRFC5 mRNA for replication factor C 38 kDa subunit, complete cds.
PROD=replication factor C 38 kDa subunit
FL= gb:AK103751.1 gb:AK059559.1 gb:AB109201.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g578709/11Activator 1 38 kDa subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57808Os.26886.1.S1_x_at6/113+32878593..32880371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57808OsAffx.16244.1.S1_x_at1/113+32878593..32880371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820Os.26886.6.S1_s_at9/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820Os.26886.2.S1_s_at8/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820OsAffx.16467.1.S1_at7/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820OsAffx.3425.1.S1_at1/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57830OsAffx.13534.1.S1_at11/113+32887148..32889829hypothetical protein
LOC_Os03g57830OsAffx.20869.1.S1_at1/113+32887148..32889829hypothetical protein
LOC_Os03g57830Os.50619.1.S1_at1/113+32887148..32889829hypothetical protein
LOC_Os03g57840Os.8686.1.S1_at11/113+32890478..32895823Sterol-regulatory element binding protein site 2 protease containing protein, expressed
LOC_Os03g57854Os.49622.1.S1_at11/113+32896843..32903489BTB/POZ domain containing protein, expressed
LOC_Os03g57870Os.28012.1.S1_at9/113+32903614..32906711Activator 1 38 kDa subunit, putative, expressed
LOC_Os03g57880OsAffx.25749.1.S1_s_at11/113+32909830..32912190Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g57880OsAffx.25749.1.S1_at11/113+32909830..32912190Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g57890Os.12059.1.S1_at11/113+32913214..32915847AN1-like Zinc finger family protein, expressed
LOC_Os03g57900Os.49768.1.S1_at11/113+32921106..32921903AN1-like Zinc finger family protein, expressed
LOC_Os03g57910Os.52448.1.S1_at11/113+32923450..32925085expressed protein
LOC_Os03g57910Os.52448.1.S1_x_at11/113+32923450..32925085expressed protein
LOC_Os03g57910Os.52448.2.S1_at5/113+32923450..32925085expressed protein
LOC_Os03g57920Os.55594.1.S1_at11/113+32925978..32927052AN1-like Zinc finger family protein, expressed
LOC_Os03g57930OsAffx.13535.1.S1_at11/113+32927968..32928849expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005663cellular_componentDNA replication factor C complex
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28012.1.S1_at--486--7951Chr03:32904898..32904922 (25 bp)
GGATAGCAGCACAATCGAACCGTAA
LOC_Os03g57870
Os.28012.1.S1_at--621--1611Chr03:32904864..32904888 (25 bp)
AGCGATACTGTTTTTTGAGACCTGC
LOC_Os03g57870
Os.28012.1.S1_at--789--5131NONE
GCAAAGTCCAGCAATACCCATTTAC
NONE
Os.28012.1.S1_at--817--2431Chr03:32904443..32904464 (22 bp)
AAAAGGCTATTTGCTGTGCGCCAGA
LOC_Os03g57870
Os.28012.1.S1_at--692--4731Chr03:32904431..32904455 (25 bp)
GCTGTGCGCCAGAAGTTCTACGAAT
LOC_Os03g57870
Os.28012.1.S1_at--1015--5591Chr03:32904236..32904260 (25 bp)
GAAATTTGTCACTGGGCTGCACACT
LOC_Os03g57870
Os.28012.1.S1_at--1017--7571Chr03:32903983..32904247 (25 bp)
GGGCTGCACACTATGAACACAAGAT
LOC_Os03g57870
Os.28012.1.S1_at--74--10031Chr03:32903819..32903839 (21 bp)
TAGAAGCTTTCGTCGCCAAGTTCAT
LOC_Os03g57870
Os.28012.1.S1_at--237--10551Chr03:32903777..32903801 (25 bp)
TTCTTGTCTCTACATTTGGCTGAGC
LOC_Os03g57870
Os.28012.1.S1_at--469--2231NONE
ACAAGGTAAGCTGCTGCATGTCCAT
NONE
Os.28012.1.S1_at--426--10831Chr03:32903705..32903729 (25 bp)
TTGGGAAACTCTCCATGCTAGCCAT
LOC_Os03g57870
Target Sequence 
GGATAGCAGCACAATCGAACCGTAACCTGAGACGAGCGATACTGTTTTTTGAGACCTGCAAAGTCCAGCAATACCCATTT
ACATCAAATCAAGTAGCACCTCCTCTTGACTGGGAGCAATATGTGTCAGAAATAGCAGCTGATATCATGAAAGAACAAAG
CCCTAAAAGGCTATTTGCTGTGCGCCAGAAGTTCTACGAATTACTTGTGAATTGTATCCCACCTGAAAGCATCTTAAAGA
AGTTGTTGGCGGAGTTACTGAAGAAATTAGACTCTGACTTGAAACATGAAATTTGTCACTGGGCTGCACACTATGAACAC
AAGATGCGTCTTGGGTCCAAGGCCATTTTTCACCTAGAAGCTTTCGTCGCCAAGTTCATGAGCATCTACAAGGAATTTCT
TGTCTCTACATTTGGCTGAGCATCTACAAGGTAAGCTGCTGCATGTCCATTTCCGGCAACACAAGGATGTTGGGAAACTC
TCCATGCTAGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis