Browse Element(s) Details


Os.28209.2.S1_at

Description gb:AK061988.1
DB_XREF= gi:32972006
TID=Os.28209.2
CNT=71
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28209 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ubiquitin ribosomal protein S27a (P0537A05.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-043-B08, full insert sequence.
FL= gb:AK059242.1 gb:AK061988.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2249011/11ubiquitin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22440OsAffx.11157.1.S1_at3/111+12603727..12604185hypothetical protein
LOC_Os01g22450OsAffx.11158.1.S1_at8/111+12610507..12612419hypothetical protein
LOC_Os01g22450Os.45671.1.S1_x_at5/111+12610507..12612419hypothetical protein
LOC_Os01g22450Os.45671.1.S1_at4/111+12610507..12612419hypothetical protein
LOC_Os01g22480Os.33000.1.S1_x_at11/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22480Os.33000.1.S2_at10/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22490Os.28209.2.S1_at11/111+12628070..12628889ubiquitin, putative, expressed
LOC_Os01g22500Os.1574.1.S1_at11/111+12629067..12632493Bucentaur or craniofacial development family protein, expressed
LOC_Os01g22510OsAffx.1782.2.S1_at11/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22510Os.1505.1.S1_x_at9/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22520Os.1506.1.S1_at10/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22520OsAffx.26764.1.S1_x_at1/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22530OsAffx.23340.1.S1_at11/111+12643396..12643882hypothetical protein
LOC_Os01g22530OsAffx.23340.1.S1_x_at11/111+12643396..12643882hypothetical protein
LOC_Os01g22540OsAffx.23341.2.S1_at11/111+12647201..12647921hypothetical protein
LOC_Os01g22540OsAffx.23341.1.S1_s_at11/111+12647201..12647921hypothetical protein
LOC_Os01g22540OsAffx.23341.1.S1_at4/111+12647201..12647921hypothetical protein
LOC_Os01g22550Os.53990.1.S1_at11/111+12649850..12655220Galactosyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006512biological_processubiquitin cycle
GO:0009733biological_processresponse to auxin stimulus
GO:0042787biological_processprotein ubiquitination during ubiquitin-dependent protein catabolism
GO:0045116biological_processprotein neddylation
GO:0005622cellular_componentintracellular
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28209.2.S1_at--954--2911Chr01:12628399..12628423 (25 bp)
AAGGAGTGCCCCAACGCCGAGTGCG
LOC_Os01g22490
Os.28209.2.S1_at--281--2651Chr01:12628303..12628327 (25 bp)
AACCAGCAGGCTTAGGCGTAGGCTC
LOC_Os01g22490
Os.28209.2.S1_at--89--10451Chr01:12628292..12628316 (25 bp)
TTAGGCGTAGGCTCCTGTTCTTTGG
LOC_Os01g22490
Os.28209.2.S1_at--1012--3031Chr01:12628215..12628239 (25 bp)
AATCCTTTTTTGTCATGTCGTATTA
LOC_Os01g22490
Os.28209.2.S1_at--81--8711Chr01:12628200..12628224 (25 bp)
TGTCGTATTAAACTAGTCTCCTTGG
LOC_Os01g22490
Os.28209.2.S1_at--1109--6871Chr01:12628185..12628209 (25 bp)
GTCTCCTTGGAACTGAACACCTTAG
LOC_Os01g22490
Os.28209.2.S1_at--1086--2471Chr01:12628170..12628194 (25 bp)
AACACCTTAGCATCACCTCTGTGAA
LOC_Os01g22490
Os.28209.2.S1_at--1092--3771Chr01:12628154..12628178 (25 bp)
CTCTGTGAAGATTGTGATGCCCTAC
LOC_Os01g22490
Os.28209.2.S1_at--463--6351Chr01:12628139..12628163 (25 bp)
GATGCCCTACTTTTGGTTTTGAAAT
LOC_Os01g22490
Os.28209.2.S1_at--749--7011Chr01:12628106..12628130 (25 bp)
GTACTACTGTCGAATTATGTTTGGG
LOC_Os01g22490
Os.28209.2.S1_at--980--8752Chr10:7105001..7105023 (22 bp)
TGTTTGGGTTAATCATCTTTTTATC
NONE
Target Sequence 
AAGGAGTGCCCCAACGCCGAGTGCGGCGCCGGCACCTTCATGGCCAACCACTTCGACCGCCACTACTGCGGTAAGTGCGG
CCTCACCTACGTCTACAACCAGCAGGCTTAGGCGTAGGCTCCTGTTCTTTGGGGGCGGAAGTAAGGAAGGAGGAGGAAAT
CGAACTGGTTATTAGATGATAATTAATCCTTTTTTGTCATGTCGTATTAAACTAGTCTCCTTGGAACTGAACACCTTAGC
ATCACCTCTGTGAAGATTGTGATGCCCTACTTTTGGTTTTGAAATCATGTTATGTACTACTGTCGAATTATGTTTGGGTT
AATCATCTTTTTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28209.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis