Browse Element(s) Details

Os.28214.2.S1_x_at

Description

gb:CB659234
DB_XREF= gi:29662959
DB_XREF=OSJNEc16A19.r
CLONE=OSJNEc16A19
TID=Os.28214.2
CNT=156
FEA=FLmRNA
TIER=Stack
STK=14
UG=Os.28214 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-301-C06, full insert sequence
FL= gb:AK099616.1 gb:AK104270.1 gb:AK104464.1 gb:AK099015.1 gb:AK104377.1 gb:AK073531.1 gb:AK099141.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g22960	11/11	aquaporin TIP-type RB7-18C, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g22919	OsAffx.4907.1.S1_x_at	11/11	6	+	13374681..13389460	Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919	Os.33878.1.S1_at	11/11	6	+	13374681..13389460	Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919	Os.51910.1.S1_x_at	4/11	6	+	13374681..13389460	Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919	OsAffx.28164.2.S1_at	2/11	6	+	13374681..13389460	Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919	Os.52051.1.S1_x_at	2/11	6	+	13374681..13389460	Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919	Os.51910.1.S1_at	2/11	6	+	13374681..13389460	Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22919	Os.27037.1.A1_at	1/11	6	+	13374681..13389460	Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os06g22940	OsAffx.15565.1.S1_at	10/11	6	+	13390514..13392026	hypothetical protein
LOC_Os06g22950	NA	NA	6	+	13393970..13396304	hypothetical protein
LOC_Os06g22960	Os.28214.2.S1_x_at	11/11	6	+	13406320..13407829	aquaporin TIP-type RB7-18C, putative, expressed
LOC_Os06g22970	OsAffx.15567.2.S1_s_at	11/11	6	+	13410096..13413132	hypothetical protein
LOC_Os06g22970	OsAffx.20192.1.S1_at	4/11	6	+	13410096..13413132	hypothetical protein
LOC_Os06g22970	OsAffx.24960.1.S1_at	1/11	6	+	13410096..13413132	hypothetical protein
LOC_Os06g22980	Os.53359.1.S1_at	11/11	6	+	13413642..13417273	cellulose synthase family protein, putative, expressed
LOC_Os06g22980	Os.57510.1.S1_x_at	1/11	6	+	13413642..13417273	cellulose synthase family protein, putative, expressed
LOC_Os06g22990	Os.41695.4.S1_x_at	4/11	6	+	13418088..13422242	hypothetical protein
LOC_Os06g22990	Os.41695.3.S1_x_at	1/11	6	+	13418088..13422242	hypothetical protein
LOC_Os06g22990	Os.41695.2.S1_x_at	1/11	6	+	13418088..13422242	hypothetical protein
LOC_Os06g23010	OsAffx.4909.1.S1_at	11/11	6	+	13427643..13430617	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006810	biological_process	transport
GO:0009740	biological_process	gibberellic acid mediated signaling
GO:0018987	biological_process	osmoregulation
GO:0009705	cellular_component	vacuolar membrane (sensu Magnoliophyta)
GO:0016020	cellular_component	membrane
GO:0015200	molecular_function	methylammonium transporter activity
GO:0015250	molecular_function	water channel activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.28214.2.S1_x_at--273--163	1	Chr06:13407212..13407236 (25 bp)	AGCGGCGACTACACCAACATCTGGA	LOC_Os06g22960
Os.28214.2.S1_x_at--275--987	1	Chr06:13407221..13407245 (25 bp)	TACACCAACATCTGGATCTACTGGG	LOC_Os06g22960
Os.28214.2.S1_x_at--336--941	1	Chr06:13407279..13407303 (25 bp)	TCGTCTACCGGTACGTCTACATGTG	LOC_Os06g22960
Os.28214.2.S1_x_at--303--975	1	Chr06:13407338..13407362 (25 bp)	TAATTACCCATTTCGCCATCGGCAA	LOC_Os06g22960
Os.28214.2.S1_x_at--1120--441	1	Chr06:13407352..13407376 (25 bp)	GCCATCGGCAACACGCATAAAAATG	LOC_Os06g22960
Os.28214.2.S1_x_at--1003--243	1	Chr06:13407371..13407395 (25 bp)	AAAATGGTGGTCACTCCATCGTCAG	LOC_Os06g22960
Os.28214.2.S1_x_at--967--709	1	Chr06:13407380..13407404 (25 bp)	GTCACTCCATCGTCAGAATCTTGTG	LOC_Os06g22960
Os.28214.2.S1_x_at--936--293	1	Chr06:13407446..13407470 (25 bp)	AAGGCTTTTGTTGCGAGGATGTGAC	LOC_Os06g22960
Os.28214.2.S1_x_at--301--219	1	Chr06:13407469..13407493 (25 bp)	ACACTTGGGTGATGATCGATCCATG	LOC_Os06g22960
Os.28214.2.S1_x_at--466--405	1	Chr06:13407485..13407509 (25 bp)	CGATCCATGTTTAGTTTCTTCTTGA	LOC_Os06g22960
Os.28214.2.S1_x_at--286--639	1	Chr06:13407562..13407586 (25 bp)	GATCGAACACTTCTGTTGAGTTTCA	LOC_Os06g22960

Target Sequence

AGCGGCGACTACACCAACATCTGGATCTACTGGGTCGGCCCCCTCGTCGGCGGCGGCCTCGCCGGCCTCGTCTACCGGTA
CGTCTACATGTGCGGCGACCACGCCCCCGTTGCCAGCAGCGAGTTNTAATTACCCATTTCGCCATCGGCAACACGCATAA
AAATGGTGGTCACTCCATCGTCAGAATCTTGTGAGGATGTGTTGTGAAGGACTGATTTGGTTCAGATGGGGAAGAAGGCT
TTTGTTGCGAGGATGTGACACTTGGGTGATGATCGATCCATGTTTAGTTTCTTCTTGATTAATTTGTAATGTGATCAGTG
TGGAGCAAGTTGGATGAGATGCATGTTTAAGATCGAACACTTCTGTTGAGTTTCA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis