Browse Element(s) Details


Os.28450.1.S1_at

Description gb:AY304538.1
DB_XREF= gi:32141026
TID=Os.28450.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28450 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) gravity and root development protein mRNA, complete cds.
PROD=gravity and root development protein
FL= gb:AY304538.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7073010/11flowering promoting factor-like 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70670Os.18167.1.A1_at10/111+41242189..41247610BTB/POZ domain containing protein, expressed
LOC_Os01g70680Os.32389.2.S1_at11/111+41248727..41249320Gamma-thionins family protein, expressed
LOC_Os01g70690OsAffx.8287.1.S1_x_at1/111+41250567..41250902Rapid ALkalinization Factor family protein
LOC_Os01g70700OsAffx.28769.1.S1_s_at11/111+41253053..41256206hypothetical protein
LOC_Os01g70700OsAffx.28769.3.S1_at7/111+41253053..41256206hypothetical protein
LOC_Os01g70700OsAffx.2336.1.S1_at2/111+41253053..41256206hypothetical protein
LOC_Os01g70710NANA1+41257342..41259258heavy metal-associated domain containing protein, expressed
LOC_Os01g70720Os.38191.2.S1_at11/111+41265313..41267845expressed protein
LOC_Os01g70720Os.10402.1.S1_x_at11/111+41265313..41267845expressed protein
LOC_Os01g70730Os.28450.1.S1_at10/111+41269394..41269818flowering promoting factor-like 1, putative, expressed
LOC_Os01g70740Os.21222.1.S1_s_at11/111+41273921..41276388expressed protein
LOC_Os01g70740Os.21222.1.S1_at10/111+41273921..41276388expressed protein
LOC_Os01g70740Os.6534.1.A1_at1/111+41273921..41276388expressed protein
LOC_Os01g70750Os.56332.1.S1_at1/111+41279715..41282588hypothetical protein
LOC_Os01g70760OsAffx.22699.1.S1_x_at2/111+41283204..41286511retrotransposon protein, putative, unclassified
LOC_Os01g70770Os.4698.1.S1_at11/111+41289312..41291089Glutathione S-transferase III, putative, expressed
LOC_Os01g70780Os.15888.1.A1_at11/111+41293537..41297904SVP1-like protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009911biological_processpositive regulation of flower development
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28450.1.S1_at--451--231Chr01:41269777..41269801 (25 bp)
ATATTTATACATGTCGGGCGTGTGG
LOC_Os01g70730
Os.28450.1.S1_at--1059--4131Chr01:41269640..41269664 (25 bp)
CGCTGCTGCACATGCCGACGGGTGA
LOC_Os01g70730
Os.28450.1.S1_at--190--4071Chr01:41269625..41269649 (25 bp)
CGACGGGTGAGGTGGTCACCTCCTA
LOC_Os01g70730
Os.28450.1.S1_at--400--4131Chr01:41269574..41269598 (25 bp)
CGCTCGGCTGGGAGCGCTACTACTC
LOC_Os01g70730
Os.28450.1.S1_at--416--4431Chr01:41269521..41269545 (25 bp)
GCCATGATGCTCCAGTTCCACAAGC
LOC_Os01g70730
Os.28450.1.S1_at--751--2211Chr01:41269502..41269526 (25 bp)
ACAAGCGCTCGTCGGTGGACCTGAT
LOC_Os01g70730
Os.28450.1.S1_at--1160--4551Chr01:41269498..41269522 (25 bp)
GCGCTCGTCGGTGGACCTGATCTCG
LOC_Os01g70730
Os.28450.1.S1_at--800--9031Chr01:41269472..41269496 (25 bp)
TGCCCAAGGACTTCTCCCAGTTCGG
LOC_Os01g70730
Os.28450.1.S1_at--39--4451Chr01:41269407..41269431 (25 bp)
GCCTTCCGAGTCATCGACGTCTAAT
LOC_Os01g70730
Os.28450.1.S1_at--798--6091Chr01:41269400..41269424 (25 bp)
GAGTCATCGACGTCTAATCACCCAA
LOC_Os01g70730
Os.28450.1.S1_at--73--9371Chr01:41269394..41269418 (25 bp)
TCGACGTCTAATCACCCAAGTGTCT
NONE
Target Sequence 
ATATTTATACATGTCGGGCGTGTGGGTGTTCCGGAACGGGGTGGTGAAGCTGGTGGAGAACCCGCCGGCGTCGGCGAACA
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCGGCATCCGGCGCAAGGCGCTGCTGCACATGCCGACGGGT
GAGGTGGTCACCTCCTACGCCTCCCTGGAGCGCAAGCTCGCCGCGCTCGGCTGGGAGCGCTACTACTCCGGCGGCGGCGG
CGCCGCCGCCGCCGCCGCCATGATGCTCCAGTTCCACAAGCGCTCGTCGGTGGACCTGATCTCGCTGCCCAAGGACTTCT
CCCAGTTCGGCTCCGTCCACATGTACGACATCGTCGTCAAGAACCGCGACGCCTTCCGAGTCATCGACGTCTAATCACCC
AAGTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28450.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis