Browse Element(s) Details


Os.28617.1.S1_at

Description gb:AK111296.1
DB_XREF= gi:32996505
TID=Os.28617.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-A10, full insert sequence.
FL= gb:AK111296.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5784011/11Remorin, C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57800OsAffx.12684.1.S1_at10/112+35392089..35397227expressed protein
LOC_Os02g57810NANA2+35403554..35405149Cytochrome P450 family protein
LOC_Os02g57820Os.14536.1.S1_at11/112+35409399..35413595AT hook motif family protein, expressed
LOC_Os02g57830OsAffx.24910.1.S1_at11/112+35415150..35417750expressed protein
LOC_Os02g57830Os.7375.1.S1_at11/112+35415150..35417750expressed protein
LOC_Os02g57840Os.28617.1.S1_at11/112+35418133..35419754Remorin, C-terminal region family protein, expressed
LOC_Os02g57850Os.11920.1.S1_s_at1/112+35420449..35421472hypothetical protein
LOC_Os02g57860Os.23627.1.A1_at6/112+35425163..35426971F-box domain containing protein, expressed
LOC_Os02g57870Os.23608.1.S1_at11/112+35427793..35429999expressed protein
LOC_Os02g57880Os.23175.1.S1_at2/112+35431872..35433039hypothetical protein
LOC_Os02g57890Os.53591.1.S1_at1/112+35435057..35436739F-box domain containing protein
LOC_Os02g57890OsAffx.3098.1.S1_at1/112+35435057..35436739F-box domain containing protein
LOC_Os02g57900OsAffx.12685.1.S1_at9/112+35437471..35441000hypothetical protein
LOC_Os02g57900Os.53104.1.S1_at2/112+35437471..35441000hypothetical protein
LOC_Os02g57900OsAffx.18815.1.S1_x_at1/112+35437471..35441000hypothetical protein
LOC_Os02g57910Os.23175.1.S1_at11/112+35441874..35444096F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28617.1.S1_at--989--751Chr02:35419044..35419068 (25 bp)
ATGTCATCCATACTCTCATGGGAGA
LOC_Os02g57840
Os.28617.1.S1_at--481--931Chr02:35419269..35419293 (25 bp)
AGGAACCAGGTAGCGGCGATCCACA
LOC_Os02g57840
Os.28617.1.S1_at--599--4611Chr02:35419326..35419350 (25 bp)
GCGACGCGGCACGAGGAGATAATCA
LOC_Os02g57840
Os.28617.1.S1_at--939--1311Chr02:35419360..35419384 (25 bp)
AGATGGCCGCCAAGCACAGGTCCAA
LOC_Os02g57840
Os.28617.1.S1_at--1115--471Chr02:35419398..35419422 (25 bp)
ACCAAATTCCTCTCTTGTTTCGGCT
LOC_Os02g57840
Os.28617.1.S1_at--643--8771Chr02:35419413..35419437 (25 bp)
TGTTTCGGCTCCTAGAACCACAAAA
LOC_Os02g57840
Os.28617.1.S1_at--506--2191Chr02:35419432..35419456 (25 bp)
ACAAAAAACGCTCCTGCAGTGCAGT
LOC_Os02g57840
Os.28617.1.S1_at--199--9051Chr02:35419451..35419475 (25 bp)
TGCAGTCTCCTGTCCTGTGTGCTGA
LOC_Os02g57840
Os.28617.1.S1_at--230--2831Chr02:35419548..35419572 (25 bp)
AAGTTCCGGATTTCATGGCTCTGTC
LOC_Os02g57840
Os.28617.1.S1_at--662--3891Chr02:35419582..35419606 (25 bp)
CTGTGTTTTCCTTTTCGCTGAAGAT
LOC_Os02g57840
Os.28617.1.S1_at--160--7351Chr02:35419688..35419712 (25 bp)
GTGAATTTTGCGCTTCCAGAGATTA
LOC_Os02g57840
Target Sequence 
ATGTCATCCATACTCTCATGGGAGAACACGAGGAAGGCAGCTATAGAAGCAAAACTGCGAACACAAGAGGAGAAGCTGGA
GAGGAAGAAGGCGGAGTACGCGGAGAAGATGAGGAACCAGGTAGCGGCGATCCACAAGGCGGCGGAGGAGAAGAGGGCGA
CGGTGGAGGCGACGCGGCACGAGGAGATAATCAAGTATGAGGAGATGGCCGCCAAGCACAGGTCCAAGGGGACTACACCC
ACCAAATTCCTCTCTTGTTTCGGCTCCTAGAACCACAAAAAACGCTCCTGCAGTGCAGTCTCCTGTCCTGTGTGCTGATG
CTTCTGTGTGTTGATATGGTGATCAGTTTGCAGTTTTGGGCTTGTTTCTCTTCTTTAATCTTCTGTGTTGAAGTTCCGGA
TTTCATGGCTCTGTCATGCTGCTGCTGTGTTTTCCTTTTCGCTGAAGATGTGATCATCATGTTTGGTGAGTGTAAGCATA
CTCAAAACACTTGTAAACAGTCAGTCACATGTAAACATACCACCTTTTTTGTGAATTTTGCGCTTCCAGAGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis