Browse Element(s) Details


Os.28988.1.S1_a_at

Description gb:AK110805.1
DB_XREF= gi:32996014
TID=Os.28988.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28988 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) simiar to ATP-binding cassette, sub-family D, member 3 (P0458E05.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-E11, full insert sequence.
FL= gb:AK110805.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7353011/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73490Os.31132.1.S1_at11/111+42912020..42912918expressed protein
LOC_Os01g73500Os.15641.1.S1_at11/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_at7/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_x_at6/111+42914150..42917180expressed protein
LOC_Os01g73500OsAffx.14389.1.S1_at2/111+42914150..42917180expressed protein
LOC_Os01g73514Os.20353.1.S2_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S1_a_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S3_s_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514OsAffx.21927.1.S1_x_at1/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73530Os.28988.1.S1_a_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.2.S1_x_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.1.S1_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73540Os.33788.1.S1_at11/111+42940636..42941470YGGT family protein, putative, expressed
LOC_Os01g73550Os.12130.1.S1_at11/111+42941662..42945189mitochondrial processing peptidase alpha subunit 1,mitochondrial precursor, putative, expressed
LOC_Os01g73560Os.13960.2.S1_x_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.2.S1_s_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_a_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73570Os.8280.1.S1_x_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.1.S1_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.2.S1_x_at9/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73580Os.11387.1.S1_a_at11/111+42953169..42957287Beta-fructofuranosidase, insoluble isoenzyme 4 precursor, putative, expressed
LOC_Os01g73590OsAffx.24031.1.S1_x_at11/111+42962576..42964753Sugar transporter family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006635biological_processfatty acid beta-oxidation
GO:0015916biological_processfatty acyl coenzyme A transport
GO:0005777cellular_componentperoxisome
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28988.1.S1_a_at--299--4371Chr01:42938504..42938528 (25 bp)
CCACAAGTGTCGATGTTGAGGAGCA
LOC_Os01g73530
Os.28988.1.S1_a_at--804--7451Chr01:42938510..42938534 (25 bp)
GTGTCGATGTTGAGGAGCATTTGTA
LOC_Os01g73530
Os.28988.1.S1_a_at--940--8071Chr01:42938523..42938547 (25 bp)
GGAGCATTTGTACAAGATAGCAACT
LOC_Os01g73530
Os.28988.1.S1_a_at--137--6491Chr01:42938538..42938562 (25 bp)
GATAGCAACTAGTATGGGCATAACT
LOC_Os01g73530
Os.28988.1.S1_a_at--57--811Chr01:42938551..42938575 (25 bp)
ATGGGCATAACTGTCATCACCTCGT
LOC_Os01g73530
Os.28988.1.S1_a_at--523--9811Chr01:42938558..42938580 (23 bp)
TAACTGTCATCACCTCGTCACAAAG
LOC_Os01g73530
Os.28988.1.S1_a_at--632--7131Chr01:42938563..42938767 (25 bp)
GTCATCACCTCGTCACAAAGGCCTG
LOC_Os01g73530
Os.28988.1.S1_a_at--1002--1751Chr01:42938569..42938773 (25 bp)
ACCTCGTCACAAAGGCCTGCTCTGA
LOC_Os01g73530
Os.28988.1.S1_a_at--1135--7051Chr01:42938574..42938778 (25 bp)
GTCACAAAGGCCTGCTCTGATACCC
LOC_Os01g73530
Os.28988.1.S1_a_at--299--9471Chr01:42938769..42938793 (25 bp)
TCTGATACCCTTCCATTCGTTGGAG
LOC_Os01g73530
Os.28988.1.S1_a_at--611--2871Chr01:42938818..42938842 (25 bp)
AAGTGGGAACTATGTACAATCAACC
LOC_Os01g73530
Target Sequence 
CCACAAGTGTCGATGTTGAGGAGCATTTGTACAAGATAGCAACTAGTATGGGCATAACTGTCATCACCTCGTCACAAAGG
CCTGCTCTGATACCCTTCCATTCGTTGGAGCTGAAACTCATCGATGGTGAAGGAAAGTGGGAACTATGTACAATCAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28988.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis