Browse Element(s) Details


Os.28988.2.S1_x_at

Description gb:NM_189403.1
DB_XREF= gi:34905889
GEN=P0458E05.21
TID=Os.28988.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.28988 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) simiar to ATP-binding cassette, sub-family D, member 3 (P0458E05.21), mRNA.
PROD=simiar to ATP-binding cassette, sub-family D,member 3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7353011/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73490Os.31132.1.S1_at11/111+42912020..42912918expressed protein
LOC_Os01g73500Os.15641.1.S1_at11/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_at7/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_x_at6/111+42914150..42917180expressed protein
LOC_Os01g73500OsAffx.14389.1.S1_at2/111+42914150..42917180expressed protein
LOC_Os01g73514Os.20353.1.S2_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S1_a_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S3_s_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514OsAffx.21927.1.S1_x_at1/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73530Os.28988.1.S1_a_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.2.S1_x_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.1.S1_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73540Os.33788.1.S1_at11/111+42940636..42941470YGGT family protein, putative, expressed
LOC_Os01g73550Os.12130.1.S1_at11/111+42941662..42945189mitochondrial processing peptidase alpha subunit 1,mitochondrial precursor, putative, expressed
LOC_Os01g73560Os.13960.2.S1_x_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.2.S1_s_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_a_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73570Os.8280.1.S1_x_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.1.S1_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.2.S1_x_at9/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73580Os.11387.1.S1_a_at11/111+42953169..42957287Beta-fructofuranosidase, insoluble isoenzyme 4 precursor, putative, expressed
LOC_Os01g73590OsAffx.24031.1.S1_x_at11/111+42962576..42964753Sugar transporter family protein

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Gene Ontology Classification
GO idTypeName
GO:0006635biological_processfatty acid beta-oxidation
GO:0015916biological_processfatty acyl coenzyme A transport
GO:0005777cellular_componentperoxisome
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.28988.2.S1_x_at--1049--591Chr01:42937437..42937461 (25 bp)
ATGCCCTCTAATCCTATTATTGCGG
LOC_Os01g73530
Os.28988.2.S1_x_at--814--7511Chr01:42937491..42937515 (25 bp)
GTGGATATCGTAACGCCATCTCAAA
LOC_Os01g73530
Os.28988.2.S1_x_at--205--31Chr01:42937520..42937544 (25 bp)
ATTGGCTACCCAGTTATCTTGTGAT
LOC_Os01g73530
Os.28988.2.S1_x_at--883--2411Chr01:42937556..42937576 (21 bp)
AAAAAGCCTTCTTGTGACTGGCCCA
LOC_Os01g73530
Os.28988.2.S1_x_at--899--1591Chr01:42937686..42937710 (25 bp)
AGCTCCATTTTTAGGGTGCTCCGAG
LOC_Os01g73530
Os.28988.2.S1_x_at--42--531Chr01:42937722..42937746 (25 bp)
ATCGCTTCAGGGAGGCTTACCATGC
LOC_Os01g73530
Os.28988.2.S1_x_at--980--8871Chr01:42937751..42937775 (25 bp)
TGATGGCATCTTTCATGTTCCGCAA
LOC_Os01g73530
Os.28988.2.S1_x_at--748--4091Chr01:42937771..42937795 (25 bp)
CGCAACGTCCGTATACTTGTCTAGG
LOC_Os01g73530
Os.28988.2.S1_x_at--425--231Chr01:42937815..42937839 (25 bp)
ATATATCCCCTCTCTCATGAGGAGG
LOC_Os01g73530
Os.28988.2.S1_x_at--486--2711Chr01:42938485..42938509 (25 bp)
AAGCATACTCATTGCAGTGCCACAA
LOC_Os01g73530
Os.28988.2.S1_x_at--58--811Chr01:42938551..42938575 (25 bp)
ATGGGCATAACTGTCATCACCTCGT
LOC_Os01g73530
Target Sequence
ATGCCCTCTAATCCTATTATTGCGGCATCGGAAGAAATTATTTCCTTCCATGATGTGGATATCGTAACGCCATCTCAAAA
GCTATTGGCTACCCAGTTATCTTGTGATGTATCTCAAGGAAAAAGCCTTCTTGTGACTGGCCCAAATGGCAGTGGCAAGA
GCTCCATTTTTAGGGTGCTCCGAGGTTTGTGGCCCATCGCTTCAGGGAGGCTTACCATGCCGTCTGATGGCATCTTTCAT
GTTCCGCAACGTCCGTATACTTGTCTAGGAACCTTGAGGGATCAGATCATATATCCCCTCTCTCATGAGGAGGCAGAGTT
GAAGGTTCTTTCATTATACAAATCAGCTCTTATAAAGCATACTCATTGCAGTGCCACAAGTGTCGATGTTGAGGAGCATT
TGTACAAGATAGCAACTAGTATGGGCATAACTGTCATCACCTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28988.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis