Browse Element(s) Details


Os.29043.1.S1_at

Description gb:AK110723.1
DB_XREF= gi:32995932
TID=Os.29043.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29043 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0034C09.26 (P0034C09.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-E02, full insert sequence.
FL= gb:AK110723.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4975011/11expressed protein
LOC_Os02g504102/11expressed protein
LOC_Os12g224701/11transposon protein, putative, unclassified
LOC_Os01g589801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49680Os.32672.1.S1_x_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.2.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.3.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49690Os.18690.1.S1_at11/111+28882793..28887542Serine/threonine protein phosphatase 6, putative, expressed
LOC_Os01g49700OsAffx.2285.1.S1_at11/111+28888541..28888850hypothetical protein
LOC_Os01g49710Os.38022.2.S1_x_at11/111+28893636..28894510Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49710Os.38022.1.S1_at3/111+28893636..28894510Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49720OsAffx.11535.1.S1_at11/111+28895823..28896613glutathione S-transferase GSTU6, putative, expressed
LOC_Os01g49730Os.57153.1.S1_at11/111+28898884..28899768expressed protein
LOC_Os01g49740Os.28814.1.S1_at11/111+28899980..28902522expressed protein
LOC_Os01g49740Os.28814.2.S1_x_at11/111+28899980..28902522expressed protein
LOC_Os01g49750Os.29043.1.S1_at11/111+28902662..28903521expressed protein
LOC_Os01g49760Os.33553.2.S1_x_at11/111+28904947..28910543expressed protein
LOC_Os01g49760Os.33553.1.S1_at11/111+28904947..28910543expressed protein
LOC_Os01g49770Os.7556.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.45918.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.7556.1.S1_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49780NANA1+28916796..28917296hypothetical protein
LOC_Os01g49790NANA1+28921794..28922069hypothetical protein
LOC_Os01g49800OsAffx.11536.1.S1_at11/111+28923828..28924902hypothetical protein
LOC_Os01g49810OsAffx.23731.1.S1_at11/111+28926142..28927092hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29043.1.S1_at--253--8271Chr01:28903125..28903149 (25 bp)
GGCAGAGGATGCTACCGCCAGCAAC
LOC_Os01g49750
Os.29043.1.S1_at--255--9191Chr01:28903016..28903040 (25 bp)
TGCCGGCGACGACCTCTGACATAAG
LOC_Os01g49750
Os.29043.1.S1_at--628--5831Chr01:28903006..28903030 (25 bp)
GACCTCTGACATAAGGCGTCGACGA
LOC_Os01g49750
Os.29043.1.S1_at--50--7793Chr08:2288487..2288511 (25 bp)
GGTGCTCAGCTCCTGATACCTAGTA
NONE
Os.29043.1.S1_at--312--6495Chr12:25355380..25355476 (25 bp)
GATACCTAGTAGGAATTACCTGATA
NONE
Os.29043.1.S1_at--378--2514Chr12:25355402..25355425 (24 bp)
ATATCTGGTAGGTATCATCTGATAC
NONE
Os.29043.1.S1_at--910--9951Chr01:28902788..28902812 (25 bp)
TACCTCACGAGTATCACCCAATACA
LOC_Os01g49750
Os.29043.1.S1_at--318--18121Chr12:12677679..12677698 (20 bp)
ACCCAATACATGGTAGAAATCGTCT
LOC_Os12g22470
Os.29043.1.S1_at--395--6511Chr01:28902727..28902751 (25 bp)
GATATATCACGAGTATCATCCGATA
LOC_Os01g49750
Os.29043.1.S1_at--296--9691Chr01:28902721..28902745 (25 bp)
TCACGAGTATCATCCGATACGTGGT
LOC_Os01g49750
Os.29043.1.S1_at--1153--6471Chr01:28902664..28902688 (25 bp)
GATACCGGTTAAGTTTCAAGACACG
LOC_Os01g49750
Target Sequence 
GGCAGAGGATGCTACCGCCAGCAACAAGCCTGGTGTGGGGCGTGGTAGCGAAGGACGCGGCTACCGGCGACGAGCTCCGA
CGTGGGGCGTGGATGACGAAGGACACGGCTGCCGGCGACGACCTCTGACATAAGGCGTCGACGACAGAGGACGCGGCCGC
CGGCGACAACCTCCGACATGGGGCGTGGAGGGTGGGGCTGCCGGCAACGACGCCTCGGTGCTCAGCTCCTGATACCTAGT
AGGAATTACCTGATATCTGGTAGGTATCATCTGATACCTCGCAAGTATCACTCGATACGTGGGAGAAATCGTCTGATACC
TGATAGGTATCACATGATACCTCACGAGTATCACCCAATACATGGTAGAAATCGTCTGATATCTGATAGGTATCACATGA
TATATCACGAGTATCATCCGATACGTGGTAGAAATCATTTGATACTTTATATGTATCACTTGATACCGGTTAAGTTTCAA
GACACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis