Browse Element(s) Details


Os.2976.1.S1_at

Description gb:AK103692.1
DB_XREF= gi:32988901
TID=Os.2976.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.2976 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ubiquinone oxidoreductase subunit (OSJNBa0056G17.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136H20, full insert sequence.
FL= gb:AK103692.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4284011/11NADH:ubiquinone oxidoreductase 17.2 kD subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42780Os.38152.1.S1_x_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42780Os.38152.1.S1_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42790Os.19940.1.S1_s_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42790Os.19940.1.S1_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42800OsAffx.30755.2.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_x_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42810OsAffx.30756.1.S1_at11/1110+22757595..22757815hypothetical protein
LOC_Os10g42820Os.2998.1.S1_at11/1110+22758413..22763725early-responsive to dehydration protein, putative, expressed
LOC_Os10g42830Os.3001.1.S1_at11/1110+22765590..22770044Sugar transporter family protein, expressed
LOC_Os10g42840Os.2976.1.S1_at11/1110+22770675..22773572NADH:ubiquinone oxidoreductase 17.2 kD subunit family protein, expressed
LOC_Os10g42850Os.46843.2.S1_x_at11/1110+22777812..22778787WRKY DNA binding domain containing protein, expressed
LOC_Os10g42860Os.8501.1.S1_at10/1110+22782311..22784131ribosomal protein L35 containing protein, expressed
LOC_Os10g42870Os.2980.1.S1_at11/1110+22785007..22788050POT family protein, expressed
LOC_Os10g42880OsAffx.7892.1.S1_at11/1110+22788430..22796397retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2976.1.S1_at--398--3191Chr10:22772933..22772957 (25 bp)
CAATATCGGCGCCACACTTGTAGGA
LOC_Os10g42840
Os.2976.1.S1_at--954--671Chr10:22772557..22772895 (25 bp)
ATGACACTCAGTATGGAAGGCACAG
LOC_Os10g42840
Os.2976.1.S1_at--989--2871Chr10:22772512..22772536 (25 bp)
AAGGGCGCTACAATGCATCCCAAGT
LOC_Os10g42840
Os.2976.1.S1_at--457--5291Chr10:22772480..22772504 (25 bp)
GAATGGCATGGATGGCTGCACCACA
LOC_Os10g42840
Os.2976.1.S1_at--1098--4831Chr10:22771045..22771069 (25 bp)
GCTAAAGCGTACATCGTGGATCACA
LOC_Os10g42840
Os.2976.1.S1_at--40--7391Chr10:22770999..22771023 (25 bp)
GTGAGGAACTGATCTACCACTCCAA
LOC_Os10g42840
Os.2976.1.S1_at--1128--5731Chr10:22770941..22770965 (25 bp)
GACGAGGTACCAGCCGTGGGAACCA
LOC_Os10g42840
Os.2976.1.S1_at--1119--3311Chr10:22770889..22770913 (25 bp)
CACTGATCCAGTGTGTCATTTGATT
LOC_Os10g42840
Os.2976.1.S1_at--380--9811Chr10:22770857..22770881 (25 bp)
TAAAACAACAGTCAGCCGGCTCGGT
LOC_Os10g42840
Os.2976.1.S1_at--622--3771Chr10:22770838..22770862 (25 bp)
CTCGGTGGGCTGAATCTGAATAATG
LOC_Os10g42840
Os.2976.1.S1_at--151--1631Chr10:22770729..22770753 (25 bp)
AGCGGAGCGTCGTCCCCATTGAATG
LOC_Os10g42840
Target Sequence 
CAATATCGGCGCCACACTTGTAGGAGTAGACAAGTTCGGCAACAAATATTATGAAAAACTACATGACACTCAGTATGGAA
GGCACAGGTGGGTAGAATATGCAGAGAAAGGGCGCTACAATGCATCCCAAGTGCCCCCTGAATGGCATGGATGGCTGCAC
CACATCACCGACAGCACTGGGGACGAGCTACTGGAGCAGAATGCTAAAGCGTACATCGTGGATCACAAGGAGAACTTCTC
CGGCGAGGGTGAGGAACTGATCTACCACTCCAAGGGGCATGCTCTAAACCCAGGACAAAGGGACTGGACGAGGTACCAGC
CGTGGGAACCAAAGAAAGAAGAGGCAACCTAATTAAGGCACTGATCCAGTGTGTCATTTGATTTGGTGTCTAAAACAACA
GTCAGCCGGCTCGGTGGGCTGAATCTGAATAATGTTGTCTTGAGGATTGTTTACCTGAGAATGGAAGAACATGATGGAGT
TTTAATTCCCANANNANANNNTTGTTTATTTTTGATGGAGCGGAGCGTCGTCCCCATTGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis