Browse Element(s) Details


Os.29768.1.S1_at

Description gb:AK109876.1
DB_XREF= gi:32995085
TID=Os.29768.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29768 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative spore coat protein-like protein (P0044F08.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-C02, full insert sequence.
FL= gb:AK109876.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0362011/11Multicopper oxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03600OsAffx.22848.3.S1_x_at3/111+1464537..1468604retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g03600OsAffx.22848.4.S1_at2/111+1464537..1468604retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g03600OsAffx.22848.4.S1_x_at1/111+1464537..1468604retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g03610OsAffx.17567.1.S1_x_at1/111+1471189..1474669retrotransposon protein, putative, unclassified
LOC_Os01g03620Os.29768.1.S1_at11/111+1483202..1485699Multicopper oxidase family protein, expressed
LOC_Os01g03630Os.31788.1.S1_at11/111+1487296..1489948Multicopper oxidase family protein, expressed
LOC_Os01g03630Os.18067.1.S1_at1/111+1487296..1489948Multicopper oxidase family protein, expressed
LOC_Os01g03640OsAffx.10896.1.S1_at11/111+1494345..1497143Multicopper oxidase family protein, expressed
LOC_Os01g03650Os.845.1.A1_at10/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03650Os.845.2.A1_x_at9/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03650Os.845.2.A1_at5/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03660Os.18008.1.S1_at10/111+1505037..1509554Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03660OsAffx.23102.1.S1_at10/111+1505037..1509554Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03670Os.20305.1.S1_at11/111+1509940..1511264NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29768.1.S1_at--536--7391Chr01:1485178..1485202 (25 bp)
GTGATGTACGAGTACCTGACGCCGA
LOC_Os01g03620
Os.29768.1.S1_at--835--8731Chr01:1485182..1485206 (25 bp)
TGTACGAGTACCTGACGCCGACGGG
LOC_Os01g03620
Os.29768.1.S1_at--390--8271Chr01:1485206..1485230 (25 bp)
GGCAGTCGACGCACCTCTACATCAA
LOC_Os01g03620
Os.29768.1.S1_at--862--1511Chr01:1485365..1485389 (25 bp)
AGCAGCTCGTCAACCTGCAGGCCTT
LOC_Os01g03620
Os.29768.1.S1_at--330--891Chr01:1485383..1485407 (25 bp)
AGGCCTTCACCGACTGCATGACGGC
LOC_Os01g03620
Os.29768.1.S1_at--990--671Chr01:1485400..1485424 (25 bp)
ATGACGGCGGTCAACGACGCGGTCA
LOC_Os01g03620
Os.29768.1.S1_at--248--5811Chr01:1485415..1485439 (25 bp)
GACGCGGTCAAGTGCAACGTCGACC
LOC_Os01g03620
Os.29768.1.S1_at--474--7071Chr01:1485421..1485445 (25 bp)
GTCAAGTGCAACGTCGACCAGCACG
LOC_Os01g03620
Os.29768.1.S1_at--181--7291Chr01:1485460..1485484 (25 bp)
GTGCCGGTGCCGGACCACGAGAAGA
LOC_Os01g03620
Os.29768.1.S1_at--865--8511Chr01:1485487..1485511 (25 bp)
TGGAAGAACGTCATCAAGGTGCCCC
LOC_Os01g03620
Os.29768.1.S1_at--13--3991Chr01:1485512..1485536 (25 bp)
CGGGCTTCGTCACCTCGGTGGTCAT
LOC_Os01g03620
Target Sequence 
GTGATGTACGAGTACCTGACGCCGACGGGGCAGTCGACGCACCTCTACATCAACGGGCTCCGCCTGGAGGACCCGGTGAC
GGAGACGCCCAAGTCCGGCACGACGGAGCTGTGGCAGGTGATCAACCTCACCGGCGACAACCACCCGCTGCACATCCACC
TGGGGATGTTCCAGGCGGTGAAGATGCAGCAGCTCGTCAACCTGCAGGCCTTCACCGACTGCATGACGGCGGTCAACGAC
GCGGTCAAGTGCAACGTCGACCAGCACGCCGTCGGCCCCGTCGTGCCGGTGCCGGACCACGAGAAGACGTGGAAGAACGT
CATCAAGGTGCCCCCGGGCTTCGTCACCTCGGTGGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29768.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis