Browse Element(s) Details


Os.29803.1.S1_x_at

Description gb:AK109834.1
DB_XREF= gi:32995043
TID=Os.29803.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29803 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-D01, full insert sequence.
FL= gb:AK109834.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g239401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23880Os.4969.1.S1_at11/111+13424984..13426167expressed protein
LOC_Os01g23890NANA1+13426497..13427555hypothetical protein
LOC_Os01g23900OsAffx.22851.1.S1_at11/111+13430389..13434957retrotransposon protein, putative, unclassified
LOC_Os01g23910OsAffx.5895.1.S1_at3/111+13437389..13438368hypothetical protein
LOC_Os01g23910Os.14894.3.A1_at1/111+13437389..13438368hypothetical protein
LOC_Os01g23920OsAffx.11181.1.S1_at11/111+13442060..13443074hypothetical protein
LOC_Os01g23930Os.38395.4.S1_x_at9/111+13443925..13449960transposon protein, putative, Mutator sub-class
LOC_Os01g23930Os.38395.3.S1_x_at9/111+13443925..13449960transposon protein, putative, Mutator sub-class
LOC_Os01g23930Os.38395.2.S1_x_at8/111+13443925..13449960transposon protein, putative, Mutator sub-class
LOC_Os01g23940OsAffx.23361.2.S1_at11/111+13450471..13452240hypothetical protein
LOC_Os01g23940OsAffx.23361.2.S1_x_at11/111+13450471..13452240hypothetical protein
LOC_Os01g23940Os.56255.1.S1_x_at1/111+13450471..13452240hypothetical protein
LOC_Os01g23940Os.29803.1.S1_x_at1/111+13450471..13452240hypothetical protein
LOC_Os01g23960OsAffx.19776.1.S1_at1/111+13458296..13465137retrotransposon protein, putative, unclassified
LOC_Os01g23960OsAffx.20615.1.S1_at1/111+13458296..13465137retrotransposon protein, putative, unclassified
LOC_Os01g23970OsAffx.23363.1.S1_at11/111+13470386..13473432serine/threonine kinase, putative
LOC_Os01g23970OsAffx.16867.1.S1_at1/111+13470386..13473432serine/threonine kinase, putative
LOC_Os01g23970OsAffx.28164.2.S1_at1/111+13470386..13473432serine/threonine kinase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29803.1.S1_x_at--614--491Chr05:7640645..7640669 (25 bp)
ATCGGCACGTCTCCGACATTGGCAT
NONE
Os.29803.1.S1_x_at--293--8311Chr05:7640736..7640760 (25 bp)
GGCTACAACAACTTCTACAACCGAT
NONE
Os.29803.1.S1_x_at--513--9431Chr05:7640817..7640841 (25 bp)
TCGGGCTGCAGTGTTGCCGCTCATG
NONE
Os.29803.1.S1_x_at--764--1111Chr05:7640826..7640850 (25 bp)
AGTGTTGCCGCTCATGGTCCATCTC
NONE
Os.29803.1.S1_x_at--325--9231Chr05:7640843..7640867 (25 bp)
TCCATCTCCACTAGTTGTTGGAACG
NONE
Os.29803.1.S1_x_at--446--10791Chr05:7640857..7640881 (25 bp)
TTGTTGGAACGCTGCAAGGCGCCCT
NONE
Os.29803.1.S1_x_at--1003--4731Chr05:7640934..7640958 (25 bp)
GCTGTAGCTGTGTTGTGCTCTCGAA
NONE
Os.29803.1.S1_x_at--326--831Chr05:7641132..7641156 (25 bp)
ATGGCTACCGACGTCGCCATCTAGG
NONE
Os.29803.1.S1_x_at--96--452Chr05:7641150..7641174 (25 bp)
ATCTAGGCCGTTGGTCCCGCTACAT
NONE
Os.29803.1.S1_x_at--613--2052Chr05:7641183..7641207 (25 bp)
ACTTCATCCAACATGATTCATCGCC
NONE
Os.29803.1.S1_x_at--712--9611Chr05:7641200..7641219 (20 bp)
TCATCGCCAGCGTTGCCGTAAAAAA
NONE
Target Sequence 
ATCGGCACGTCTCCGACATTGGCATCGACTCTGCTTCGACTTCATCGTTCCGCCTCGCGCATCTTCGGCTTGATCACCCG
TTCAAGCGTCCGGCTACAACAACTTCTACAACCGATCATCATCGAGCATGCATCTACACCATCAAGCTTCGGGCTGCCGC
TGCGTCGCCCTCTCGGGCTGCAGTGTTGCCGCTCATGGTCCATCTCCACTAGTTGTTGGAACGCTGCAAGGCGCCCTCCT
CAGCGTGGCCTCACCACCGGTGAACTTCTCGCCGCTGCATCGACATGGAGCTGTAGCTGTGTTGTGCTCTCGAACCGCAG
CTTCGCCGCTTTCATCGTCTTCATCGCCGTTCGCGCATCGACAACCTCGTCATCCGCACTGGTCATCGTCAGCCGCTTAG
GGTCTTCTTCCTCTACTTCGAGCATCGCCGCCGCGTCTCCAAGCTGCCACTGTCGCCGCTCTAGGCCGGTGATCCAGCTA
CCTCTACATGGCTACCGACGTCGCCATCTAGGCCGTTGGTCCCGCTACATCGCCTTATACTTCATCCAACATGATTCATC
GCCAGCGTTGCCGTAAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29803.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis