Browse Element(s) Details


Os.29826.2.S1_at

Description gb:AK073604.1
DB_XREF= gi:32983627
TID=Os.29826.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.29826 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pectin methylesterase (P0439E07.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033049L01, full insert sequence.
FL= gb:AK073604.1 gb:AK105996.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g539906/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53970OsAffx.2327.1.S1_at11/111+31358184..31358780hypothetical protein
LOC_Os01g53980Os.42155.1.S1_at11/111+31374358..31376236IQ calmodulin-binding motif family protein, expressed
LOC_Os01g53980Os.40388.2.S1_s_at1/111+31374358..31376236IQ calmodulin-binding motif family protein, expressed
LOC_Os01g53990Os.29826.1.S1_at11/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g53990Os.29826.2.S1_x_at9/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g53990Os.29826.2.S1_at6/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g54000OsAffx.23784.1.S1_at11/111+31389764..31390018hypothetical protein
LOC_Os01g54010Os.37851.2.S1_x_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010Os.37851.2.S1_s_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010Os.37851.1.S1_s_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54020Os.14456.1.S1_at11/111+31397039..31403124Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os01g54030Os.47303.1.S1_at11/111+31403419..31408115NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54030Os.47303.1.S1_s_at11/111+31403419..31408115NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54040Os.32537.2.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040OsAffx.21636.1.S1_x_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.1.A1_at10/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.2.S1_at9/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.2.A1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29826.2.S1_at--477--10591Chr01:31382654..31382678 (25 bp)
TTCTCCGGCAGGGTGTCGTGGTCAC
LOC_Os01g53990
Os.29826.2.S1_at--485--4251Chr01:31382650..31382674 (25 bp)
CCGGCAGGGTGTCGTGGTCACGCGA
LOC_Os01g53990
Os.29826.2.S1_at--947--9671Chr01:31382590..31382614 (25 bp)
TCACCTTCATCGACGGCACGGAATG
LOC_Os01g53990
Os.29826.2.S1_at--479--10531Chr01:31382585..31382609 (25 bp)
TTCATCGACGGCACGGAATGGGTCA
LOC_Os01g53990
Os.29826.2.S1_at--366--5751Chr01:31382579..31382603 (25 bp)
GACGGCACGGAATGGGTCAGGTTGT
LOC_Os01g53990
Os.29826.2.S1_at--637--7091Chr01:31382564..31382588 (25 bp)
GTCAGGTTGTGAGAGATCGATCCAT
LOC_Os01g53990
Os.29826.2.S1_at--38--251Chr01:31382460..31382484 (25 bp)
ATATACAGATTCATTTGCAGTCTCG
NONE
Os.29826.2.S1_at--475--2131Chr01:31382456..31382480 (25 bp)
ACAGATTCATTTGCAGTCTCGTTGG
NONE
Os.29826.2.S1_at--543--6571Chr01:31382453..31382477 (25 bp)
GATTCATTTGCAGTCTCGTTGGAGA
NONE
Os.29826.2.S1_at--86--211Chr01:31382448..31382472 (25 bp)
ATTTGCAGTCTCGTTGGAGATTGTC
NONE
Os.29826.2.S1_at--816--3451Chr01:31382443..31382467 (25 bp)
CAGTCTCGTTGGAGATTGTCTTCTT
NONE
Target Sequence 
TTCTCCGGCAGGGTGTCGTGGTCACGCGAGCTCACCGACGAGGAGGCCAAGCCCTTCATCTCGCTCACCTTCATCGACGG
CACGGAATGGGTCAGGTTGTGAGAGATCGATCCATCGGTCGATCGAGTTCATTGTAGCACACCGCACACGGCATCATAGC
GTCACACGATGTAAAAAGAAAAACAGACGAATATATATACAGATTCATTTGCAGTCTCGTTGGAGATTGTCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29826.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis