Browse Element(s) Details


Os.3095.1.S1_at

Description gb:AK119635.1
DB_XREF= gi:37989258
TID=Os.3095.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3095 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein phosphatase 2C (OSJNBa0001O14.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F02, full insert sequence.
FL= gb:AK119635.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3978011/11protein phosphatase 2C homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39764NANA10+20939223..20939568NA
LOC_Os10g39770Os.46881.1.S2_at11/1110+20942029..20947104Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39770Os.46881.1.S1_at11/1110+20942029..20947104Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39780Os.3095.1.S1_at11/1110+20963398..20967794protein phosphatase 2C homolog, putative, expressed
LOC_Os10g39790Os.46516.1.S1_at11/1110+20968971..20972019CorA-like Mg2+ transporter protein, expressed
LOC_Os10g39800Os.46632.1.S1_at11/1110+20972324..20975976hypothetical protein
LOC_Os10g39810Os.3082.1.S1_at10/1110+20978768..20981722Sterol desaturase family protein, expressed
LOC_Os10g39820Os.3085.1.S1_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.47632.1.S1_s_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.15864.1.S1_s_at1/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39830OsAffx.18584.1.S1_at10/1110+20986666..20989668expressed protein
LOC_Os10g39840Os.46631.1.S1_x_at10/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39840OsAffx.16482.1.S1_x_at1/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3095.1.S1_at--1100--2931Chr10:20967302..20967326 (25 bp)
AAGGCGGCACTTCCATGATGATATA
LOC_Os10g39780
Os.3095.1.S1_at--1008--3431Chr10:20967328..20967352 (25 bp)
CAGTTGTTGTGGTGTTCTTTGATTC
LOC_Os10g39780
Os.3095.1.S1_at--751--9351Chr10:20967351..20967375 (25 bp)
TCGAATGCCATAACCACTGCTAACT
LOC_Os10g39780
Os.3095.1.S1_at--909--1971Chr10:20967366..20967390 (25 bp)
ACTGCTAACTGGAGCCGACCTTCAG
LOC_Os10g39780
Os.3095.1.S1_at--289--4231Chr10:20967380..20967404 (25 bp)
CCGACCTTCAGTTTCTCTTCGAGGG
LOC_Os10g39780
Os.3095.1.S1_at--282--2251Chr10:20967425..20967449 (25 bp)
AAATTCCCTTGCTCCATTCTCAGTT
LOC_Os10g39780
Os.3095.1.S1_at--630--111Chr10:20967440..20967464 (25 bp)
ATTCTCAGTTCCTACATAGCTAAGA
LOC_Os10g39780
Os.3095.1.S1_at--116--2571Chr10:20967575..20967599 (25 bp)
AACTGTTGCGTGATTTCTTCTGCGT
LOC_Os10g39780
Os.3095.1.S1_at--261--4311Chr10:20967694..20967718 (25 bp)
CCTTTTTTCACGCTCATGGGATATC
LOC_Os10g39780
Os.3095.1.S1_at--137--6511Chr10:20967713..20967737 (25 bp)
GATATCAGGTGGTTGTACATTCTCT
LOC_Os10g39780
Os.3095.1.S1_at--937--9311Chr10:20967765..20967789 (25 bp)
TCCCTTATTTTGTTAACTCCTTCAG
LOC_Os10g39780
Target Sequence 
AAGGCGGCACTTCCATGATGATATAACAGTTGTTGTGGTGTTCTTTGATTCGAATGCCATAACCACTGCTAACTGGAGCC
GACCTTCAGTTTCTCTTCGAGGGGGTGGTGTTACTCTCCCTGCAAATTCCCTTGCTCCATTCTCAGTTCCTACATAGCTA
AGAAGCTCTTTTTAAAAACAGCACCGAATTTAAGAATGCAAGAAGACCAAAAAANAAAAAAAAAGAAAAAAAAGAGGAAG
AAAAGGAAAAGGAAGAGAGCATCAGTTGTGATTAACTGTTGCGTGATTTCTTCTGCGTTGNTCTTGTAAAACCTTTTTAG
ATTCAAACTTGGTGACTAGTGTACTGATAGCAAGGTATAAGATTAGATTATTCTTAGCTTTTCTTTTTCACCCCTTTTTT
CACGCTCATGGGATATCAGGTGGTTGTACATTCTCTNNNNCATCTTGTGATAATAGTTCATCATCCCTTATTTTGTTAAC
TCCTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis