Browse Element(s) Details


Os.31624.1.S1_at

Description gb:AK107015.1
DB_XREF= gi:32992224
TID=Os.31624.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31624 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-G02, full insert sequence.
FL= gb:AK107015.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1233011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12280Os.17038.2.S1_x_at9/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12280Os.17038.1.S1_at8/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12280Os.17038.2.S1_at1/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12290OsAffx.22097.1.S1_at11/111+6708617..6710944D-mannose binding lectin family protein
LOC_Os01g12300OsAffx.22097.2.S1_x_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12300OsAffx.22097.3.S1_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12310NANA1+6719007..6719402Histone deacetylase RPD3, putative
LOC_Os01g12320Os.3754.1.S1_at11/111+6721743..6725340GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g12330Os.31624.1.S1_at11/111+6728954..6732284expressed protein
LOC_Os01g12330Os.31624.2.S1_x_at11/111+6728954..6732284expressed protein
LOC_Os01g12340OsAffx.9045.1.S1_x_at4/111+6732560..6743100retrotransposon protein, putative, unclassified
LOC_Os01g12340OsAffx.9905.1.S1_at3/111+6732560..6743100retrotransposon protein, putative, unclassified
LOC_Os01g12340OsAffx.9045.1.S1_at3/111+6732560..6743100retrotransposon protein, putative, unclassified
LOC_Os01g12350Os.31312.2.S1_x_at2/111+6744278..6747530retrotransposon protein, putative, unclassified
LOC_Os01g12350Os.31312.5.S1_x_at2/111+6744278..6747530retrotransposon protein, putative, unclassified
LOC_Os01g12360OsAffx.22492.1.S1_x_at1/111+6748159..6754314retrotransposon protein, putative, unclassified, expressed
LOC_Os01g12360OsAffx.22492.1.S1_at1/111+6748159..6754314retrotransposon protein, putative, unclassified, expressed
LOC_Os01g12374OsAffx.22233.2.S1_x_at7/111+6755777..6760669expressed protein
LOC_Os01g12374OsAffx.22233.5.S1_x_at3/111+6755777..6760669expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31624.1.S1_at--521--2111Chr01:6731704..6731728 (25 bp)
ACAGTCGATGCCGTCCTGGTTGGCT
LOC_Os01g12330
Os.31624.1.S1_at--1057--7231Chr01:6731716..6731740 (25 bp)
GTCCTGGTTGGCTTCCTCTCGGTGT
LOC_Os01g12330
Os.31624.1.S1_at--541--9431Chr01:6731734..6731758 (25 bp)
TCGGTGTCCGTAGCAGTCGTCTTCG
LOC_Os01g12330
Os.31624.1.S1_at--769--6611Chr01:6731839..6731863 (25 bp)
GTTGGCCGGCGCAAAGGAGCCCATC
LOC_Os01g12330
Os.31624.1.S1_at--1100--2291Chr01:6731851..6731875 (25 bp)
AAAGGAGCCCATCATTTCCCATGTT
LOC_Os01g12330
Os.31624.1.S1_at--486--10651Chr01:6731866..6731890 (25 bp)
TTCCCATGTTGTCGTTGCCGTCGTA
LOC_Os01g12330
Os.31624.1.S1_at--560--4491Chr01:6731882..6731906 (25 bp)
GCCGTCGTAGCTCCCATGTCGGTTG
LOC_Os01g12330
Os.31624.1.S1_at--449--6591Chr01:6731912..6731936 (25 bp)
GATTGAATCAAGTGGGACAGCTCCC
LOC_Os01g12330
Os.31624.1.S1_at--792--2151Chr01:6731928..6731952 (25 bp)
ACAGCTCCCATGTCGCCGAGAGAAA
LOC_Os01g12330
Os.31624.1.S1_at--756--6191Chr01:6732209..6732233 (25 bp)
GAGGCTGACAGGTGGAACCACATGA
LOC_Os01g12330
Os.31624.1.S1_at--171--8191Chr01:6732222..6732246 (25 bp)
GGAACCACATGATTTTTTGTGTAAC
LOC_Os01g12330
Target Sequence 
ACAGTCGATGCCGTCCTGGTTGGCTTCCTCTCGGTGTCCGTAGCAGTCGTCTTCGCCTCACCGGCCGCCATTCTTTCCTC
CATGGCGACGCCTGCTGCCACCTTCCTGGACTTCGAGACGGTGGAGGGGCCTTCCGTTGGCCGGCGCAAAGGAGCCCATC
ATTTCCCATGTTGTCGTTGCCGTCGTAGCTCCCATGTCGGTTGGGGGTGATTGAATCAAGTGGGACAGCTCCCATGTCGC
CGAGAGAAAGAAGAGGAAGATCCGAGGGTGGAGAGGGAGAGGGGAGGGGAGCCGGCGAGAACGAGCGAGGCGGCCAGGCG
GGCTGTGACCTTGGCCGGTGAGCTCGCCCGCCACCGCTCCGCCCGCCGCCGCTCCCGCCACCCCTCTGCTCCGTCCGCCG
CCTGTCACCCCCTCTGCGCCCCTCCGCCTATCACCCCCTCCGCGCCGCCGCTCGCCTTCTTGTAGTGTAAGGGAGAGAGA
GAGGGAATAGAGACTAGAGAGGAGGGAGGCTGACAGGTGGAACCACATGATTTTTTGTGTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31624.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis