Browse Element(s) Details


Os.31624.2.S1_x_at

Description gb:NM_188522.1
DB_XREF= gi:34904127
TID=Os.31624.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31624 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1233011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12280Os.17038.2.S1_x_at9/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12280Os.17038.1.S1_at8/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12280Os.17038.2.S1_at1/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12290OsAffx.22097.1.S1_at11/111+6708617..6710944D-mannose binding lectin family protein
LOC_Os01g12300OsAffx.22097.2.S1_x_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12300OsAffx.22097.3.S1_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12310NANA1+6719007..6719402Histone deacetylase RPD3, putative
LOC_Os01g12320Os.3754.1.S1_at11/111+6721743..6725340GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g12330Os.31624.1.S1_at11/111+6728954..6732284expressed protein
LOC_Os01g12330Os.31624.2.S1_x_at11/111+6728954..6732284expressed protein
LOC_Os01g12340OsAffx.9045.1.S1_x_at4/111+6732560..6743100retrotransposon protein, putative, unclassified
LOC_Os01g12340OsAffx.9905.1.S1_at3/111+6732560..6743100retrotransposon protein, putative, unclassified
LOC_Os01g12340OsAffx.9045.1.S1_at3/111+6732560..6743100retrotransposon protein, putative, unclassified
LOC_Os01g12350Os.31312.2.S1_x_at2/111+6744278..6747530retrotransposon protein, putative, unclassified
LOC_Os01g12350Os.31312.5.S1_x_at2/111+6744278..6747530retrotransposon protein, putative, unclassified
LOC_Os01g12360OsAffx.22492.1.S1_x_at1/111+6748159..6754314retrotransposon protein, putative, unclassified, expressed
LOC_Os01g12360OsAffx.22492.1.S1_at1/111+6748159..6754314retrotransposon protein, putative, unclassified, expressed
LOC_Os01g12374OsAffx.22233.2.S1_x_at7/111+6755777..6760669expressed protein
LOC_Os01g12374OsAffx.22233.5.S1_x_at3/111+6755777..6760669expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31624.2.S1_x_at--1043--1751Chr01:6730885..6730909 (25 bp)
ACCTCCCTATGTGCACTATCAAGGA
LOC_Os01g12330
Os.31624.2.S1_x_at--679--5491Chr01:6730952..6730976 (25 bp)
GAACACCCTTGCAAGATCACGGCGA
LOC_Os01g12330
Os.31624.2.S1_x_at--405--5931Chr01:6731005..6731029 (25 bp)
GAGCATCTGGATATCGACAGCCGGT
LOC_Os01g12330
Os.31624.2.S1_x_at--117--7731Chr01:6731027..6731051 (25 bp)
GGTGTCGGTACTTTCGCCTTTGACA
LOC_Os01g12330
Os.31624.2.S1_x_at--1053--7511Chr01:6731100..6731124 (25 bp)
GTGGCAACGCTGAGTACGTCGCCGA
LOC_Os01g12330
Os.31624.2.S1_x_at--989--6711Chr01:6731137..6731161 (25 bp)
GTTCGGCCTCTCAAGTCAGGGTGAT
LOC_Os01g12330
Os.31624.2.S1_x_at--348--8871Chr01:6731158..6731182 (25 bp)
TGATGACTTGTTCTGTGCCTCCGAT
LOC_Os01g12330
Os.31624.2.S1_x_at--1137--231Chr01:6731181..6731205 (25 bp)
ATATCGCAGCAGCATCAGTATCACC
LOC_Os01g12330
Os.31624.2.S1_x_at--1156--5591Chr01:6731248..6731272 (25 bp)
GACAACGTCGCGCAAGTGCTACCAT
LOC_Os01g12330
Os.31624.2.S1_x_at--809--291Chr01:6731271..6731295 (25 bp)
ATAGCAAGTCCTACCTGGTGTACCT
LOC_Os01g12330
Os.31624.2.S1_x_at--544--4651Chr01:6731313..6731337 (25 bp)
GCGTCGGCAGGTTGTTCCATGTTGA
LOC_Os01g12330
Target Sequence 
ACCTCCCTATGTGCACTATCAAGGATATGAAAAGGACGAGGCGCCGCCGGGCTACGACATTTCCGTCGAACACCCTTGCA
AGATCACGGCGACTGCGGTGGTCGGTGGCGGCTCCGGCTCGAGCATCTGGATATCGACAGCCGGTGTCGGTACTTTCGCC
TTTGACACGGCGAATGATACATGGACCAAGCGGGGCGATTGGGCTCTGCCGTTCCGTGGCAACGCTGAGTACGTCGCCGA
GCACGGCCTCTGGTTCGGCCTCTCAAGTCAGGGTGATGACTTGTTCTGTGCCTCCGATATCGCAGCAGCATCAGTATCAC
CACCGGTGGTGCTGGACGCGTGGGGGTTGGATCATCTAGGGGTGACAACGTCGCGCAAGTGCTACCATAGCAAGTCCTAC
CTGGTGTACCTGGGCAATGGCAGGTTCTGCGTCGGCAGGTTGTTCCATGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31624.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis