Browse Element(s) Details


Os.31625.2.S1_x_at

Description gb:NM_189124.1
DB_XREF= gi:34905331
TID=Os.31625.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ9990_A01.14 (OJ9990_A01.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ9990_A01.14 (OJ9990_A01.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0665911/11expressed protein
LOC_Os05g195601/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06600Os.36139.1.S1_at11/118+3716022..3719897Nuf2 family protein, expressed
LOC_Os08g06610Os.12047.1.S1_a_at11/118+3720558..3721117Mps one binder kinase activator-like 1A, putative
LOC_Os08g06620OsAffx.16857.1.S1_s_at11/118+3721757..3722500expressed protein
LOC_Os08g06630Os.3407.1.S1_a_at10/118+3726171..3730177Sigma-70 region 2 family protein, expressed
LOC_Os08g06640OsAffx.9796.1.S1_x_at11/118+3733845..3739068expressed protein
LOC_Os08g06640Os.17547.1.S1_at9/118+3733845..3739068expressed protein
LOC_Os08g06659Os.31625.1.S1_at11/118+3741880..3743529expressed protein
LOC_Os08g06659OsAffx.29067.1.S1_s_at11/118+3741880..3743529expressed protein
LOC_Os08g06659Os.31625.2.S1_x_at11/118+3741880..3743529expressed protein
LOC_Os08g06680OsAffx.5725.1.S1_at11/118+3744313..3744615hypothetical protein
LOC_Os08g06690OsAffx.21982.1.S1_x_at11/118+3746663..3748451hypothetical protein
LOC_Os08g06690OsAffx.1199.1.S1_at1/118+3746663..3748451hypothetical protein
LOC_Os08g06700Os.31736.1.S1_at11/118+3750972..3754484expressed protein
LOC_Os08g06700OsAffx.21982.1.S1_x_at5/118+3750972..3754484expressed protein
LOC_Os08g06710Os.30615.1.S1_at11/118+3756930..3758452F-box domain containing protein, expressed
LOC_Os08g06720Os.31718.2.S1_at3/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.31718.2.S1_x_at2/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.8726.3.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06720OsAffx.1199.1.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06730Os.31718.1.S1_at10/118+3764129..3766331expressed protein
LOC_Os08g06730Os.31718.2.S1_x_at10/118+3764129..3766331expressed protein
LOC_Os08g06730Os.31718.2.S1_at10/118+3764129..3766331expressed protein
LOC_Os08g06740OsAffx.16859.1.S1_at11/118+3767486..3769379hypothetical protein
LOC_Os08g06740OsAffx.21982.1.S1_x_at1/118+3767486..3769379hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31625.2.S1_x_at--1025--8411Chr08:3742847..3742871 (25 bp)
GGCCGACAAGCCGAAGCGCTTCTGG
LOC_Os08g06659
Os.31625.2.S1_x_at--705--2671Chr08:3742860..3742884 (25 bp)
AAGCGCTTCTGGTACGCGCGCCTCA
LOC_Os08g06659
Os.31625.2.S1_x_at--1081--4551Chr08:3742875..3742899 (25 bp)
GCGCGCCTCATGTTCGGCATGGAGA
LOC_Os08g06659
Os.31625.2.S1_x_at--50--9451Chr08:3742888..3742912 (25 bp)
TCGGCATGGAGAGGATCCTCGGCTT
LOC_Os08g06659
Os.31625.2.S1_x_at--837--554Chr08:3742902..3742926 (25 bp)
ATCCTCGGCTTCTCGGAGGCGGAGA
LOC_Os08g06659
Os.31625.2.S1_x_at--849--2571Chr08:3742944..3742968 (25 bp)
AACGGCTCCACCGTGATTAGCATGG
LOC_Os08g06659
Os.31625.2.S1_x_at--181--1791Chr08:3742953..3742977 (25 bp)
ACCGTGATTAGCATGGCGGCCGTCG
LOC_Os08g06659
Os.31625.2.S1_x_at--238--4611Chr08:3742992..3743016 (25 bp)
GCGAGGGTCGAGGACCCCATCCTTG
LOC_Os08g06659
Os.31625.2.S1_x_at--623--571Chr08:3743010..3743034 (25 bp)
ATCCTTGGCGCCTACGGCCGGATTC
LOC_Os08g06659
Os.31625.2.S1_x_at--496--4491Chr08:3743026..3743050 (25 bp)
GCCGGATTCTCAAGCTCCAGCAGCA
LOC_Os08g06659
Os.31625.2.S1_x_at--301--1832Chr08:3743172..3743196 (25 bp)
ACGCCGCCGGCGTTAGCGATACCGG
LOC_Os08g06659
Target Sequence 
GGCCGACAAGCCGAAGCGCTTCTGGTACGCGCGCCTCATGTTCGGCATGGAGAGGATCCTCGGCTTCTCGGAGGCGGAGA
AGCAGGGGATCCGGCCCAACGGCTCCACCGTGATTAGCATGGCGGCCGTCGTCTACCTCGCCGACGCGAGGGTCGAGGAC
CCCATCCTTGGCGCCTACGGCCGGATTCTCAAGCTCCAGCAGCAGCTCGACCGCCTCAAGGCCGAGCGCGCTCGCCAACA
CCATCCGGCAACGTCAAGCCCAGCCCCAGCCGACGACGTCGCCCTCCAGCCCGAGCCCTTCCACCAGCCGCCGGCGCAGC
CGTCGACGCCGCCGGCGTTAGCGATACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31625.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis