Browse Element(s) Details


Os.31675.1.S1_at

Description gb:AK106937.1
DB_XREF= gi:32992146
TID=Os.31675.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31675 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-C11, full insert sequence.
FL= gb:AK106937.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1121011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11160Os.33762.1.S1_at11/111+5980426..5982677Amino acid permease family protein, expressed
LOC_Os01g11170OsAffx.9936.2.S1_at11/111+5987755..5988636expressed protein
LOC_Os01g11190OsAffx.23196.1.S1_at9/111+5991588..5992257hypothetical protein
LOC_Os01g11200OsAffx.23197.1.S1_at11/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.23197.2.S1_at10/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.11754.1.S1_at1/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.23846.1.A1_at1/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11210Os.31675.1.S1_at11/111+6000326..6001671expressed protein
LOC_Os01g11210Os.31675.2.S1_x_at10/111+6000326..6001671expressed protein
LOC_Os01g11220OsAffx.9933.1.S1_at9/111+6001842..6003965expressed protein
LOC_Os01g11230Os.9306.1.S1_at11/111+6004660..6005829SOUL, putative, expressed
LOC_Os01g11240Os.12788.1.S1_at11/111+6007539..6008696expressed protein
LOC_Os01g11250Os.38354.1.S1_x_at11/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11250Os.38354.1.S1_at10/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11250Os.38354.2.A1_x_at3/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11260Os.52800.1.S1_at11/111+6021876..6026442Glycosyl transferase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31675.1.S1_at--521--6851Chr01:6001273..6001297 (25 bp)
GTTTGTCAGCAATTGACTGGCCGAT
LOC_Os01g11210
Os.31675.1.S1_at--530--31Chr01:6001284..6001308 (25 bp)
ATTGACTGGCCGATACCAACGTGAC
LOC_Os01g11210
Os.31675.1.S1_at--425--6491Chr01:6001295..6001319 (25 bp)
GATACCAACGTGACTCGAGGCCTTA
LOC_Os01g11210
Os.31675.1.S1_at--339--891Chr01:6001312..6001415 (25 bp)
AGGCCTTACCTGCACTTGGCTGTCA
LOC_Os01g11210
Os.31675.1.S1_at--704--6571Chr01:6001553..6001577 (25 bp)
GATTCCAGCACCTGACTGACCAGTA
LOC_Os01g11210
Os.31675.1.S1_at--431--5731Chr01:6001566..6001590 (25 bp)
GACTGACCAGTATTATGCTTGCTTT
LOC_Os01g11210
Os.31675.1.S1_at--1036--9051Chr01:6001581..6001605 (25 bp)
TGCTTGCTTTCAGACAAATCTTTCT
LOC_Os01g11210
Os.31675.1.S1_at--408--2271Chr01:6001596..6001620 (25 bp)
AAATCTTTCTGTTGAGTGCTGACAA
LOC_Os01g11210
Os.31675.1.S1_at--534--7311Chr01:6001611..6001635 (25 bp)
GTGCTGACAACTCTTGTGATGAATC
LOC_Os01g11210
Os.31675.1.S1_at--515--8851Chr01:6001627..6001651 (25 bp)
TGATGAATCTGTCTTACCCACTTAG
LOC_Os01g11210
Os.31675.1.S1_at--341--3671Chr01:6001647..6001671 (25 bp)
CTTAGTTGCTTGTGAAGTTTGCCCC
LOC_Os01g11210
Target Sequence 
GTTTGTCAGCAATTGACTGGCCGATACCAACGTGACTCGAGGCCTTACCTGCACTTGGCTGTCATCAACATGATGATGGC
AGTGGAGACCATGCTTTCTCCTGAAACAGCCAATAGTGACGACATTGAGAAGATGTCAAAGAATGCCATGGACGCGTGGA
AGGAATTCAAGACCAAGTATGAGCATGCCAAGGGGTCAACTGATTCCAGCACCTGACTGACCAGTATTATGCTTGCTTTC
AGACAAATCTTTCTGTTGAGTGCTGACAACTCTTGTGATGAATCTGTCTTACCCACTTAGTTGCTTGTGAAGTTTGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31675.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis