Browse Element(s) Details


Os.31950.1.S1_at

Description gb:AK106449.1
DB_XREF= gi:32991658
TID=Os.31950.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31950 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to SCARECROW (U62798) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-E10, full insert sequence.
FL= gb:AK106449.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0371011/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03676OsAffx.27443.1.S1_at11/116+1437382..1444140SET domain-containing protein, putative, expressed
LOC_Os06g03676OsAffx.27443.1.S1_x_at11/116+1437382..1444140SET domain-containing protein, putative, expressed
LOC_Os06g03676Os.44812.1.S1_at11/116+1437382..1444140SET domain-containing protein, putative, expressed
LOC_Os06g03682Os.4465.1.S1_a_at11/116+1444558..1447649Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os06g03682Os.4465.1.S1_s_at11/116+1444558..1447649Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os06g03690Os.5600.1.S1_s_at11/116+1454386..1457554RNA recognition motif family protein, expressed
LOC_Os06g03690OsAffx.27444.1.S1_at11/116+1454386..1457554RNA recognition motif family protein, expressed
LOC_Os06g03700Os.34161.2.S1_x_at11/116+1458769..1463334oligopeptide transporter 9, putative, expressed
LOC_Os06g03700Os.34161.1.S1_a_at11/116+1458769..1463334oligopeptide transporter 9, putative, expressed
LOC_Os06g03700Os.34161.1.S1_at11/116+1458769..1463334oligopeptide transporter 9, putative, expressed
LOC_Os06g03710Os.31950.1.S1_at11/116+1464501..1467594GRAS family transcription factor containing protein, expressed
LOC_Os06g03720Os.9043.1.S1_at11/116+1469866..1471141Ribonucleoside-diphosphate reductase small chain, putative, expressed
LOC_Os06g03740OsAffx.27445.1.S1_at11/116+1475240..1476237Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03740OsAffx.27445.1.S1_x_at11/116+1475240..1476237Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03740OsAffx.27445.2.S1_x_at7/116+1475240..1476237Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03750Os.44810.1.S1_at11/116+1478059..1484508dehydration-responsive family protein, putative, expressed
LOC_Os06g03750Os.52574.2.S1_x_at1/116+1478059..1484508dehydration-responsive family protein, putative, expressed
LOC_Os06g03760Os.4272.1.S1_a_at11/116+1484975..1489635LMBR1 integral membrane family protein, putative, expressed
LOC_Os06g03770Os.10814.1.S1_a_at11/116+1491885..1501584ATP-binding cassette sub-family B member 7, mitochondrial, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006808biological_processregulation of nitrogen utilization
GO:0008356biological_processasymmetric cell division
GO:0009630biological_processgravitropism
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010233biological_processphloem transport
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.31950.1.S1_at--524--8371Chr06:1464973..1464997 (25 bp)
GGCGTCCACAACAGCATCACATTCT
LOC_Os06g03710
Os.31950.1.S1_at--379--4971Chr06:1464960..1464984 (25 bp)
GCATCACATTCTCAGCAAAGCTAAG
LOC_Os06g03710
Os.31950.1.S1_at--170--3291Chr06:1464945..1464969 (25 bp)
CAAAGCTAAGCTGACGATGAATGGT
LOC_Os06g03710
Os.31950.1.S1_at--958--3451Chr06:1464881..1464905 (25 bp)
CAGTGCTTCTTTTGTTAATGATGAT
LOC_Os06g03710
Os.31950.1.S1_at--883--8471Chr06:1464701..1464725 (25 bp)
TGGCTGTTGAGAGAGAGTCCCCTGC
LOC_Os06g03710
Os.31950.1.S1_at--14--6011Chr06:1464689..1464713 (25 bp)
GAGAGTCCCCTGCAAAATGTAGCTG
LOC_Os06g03710
Os.31950.1.S1_at--625--1531Chr06:1464616..1464640 (25 bp)
AGCATCTCTCACAGTCACTATTAGT
LOC_Os06g03710
Os.31950.1.S1_at--686--9691Chr06:1464602..1464626 (25 bp)
TCACTATTAGTGTCTCCGGCTGTTA
LOC_Os06g03710
Os.31950.1.S1_at--105--7451Chr06:1464593..1464617 (25 bp)
GTGTCTCCGGCTGTTATTATACAAC
LOC_Os06g03710
Os.31950.1.S1_at--551--3152Chr12:2033123..2033480 (25 bp)
AATTCTTTCATCATTCATTCTACAT
NONE
Os.31950.1.S1_at--660--3731Chr06:1464533..1464557 (25 bp)
CTACATGTAATCTCTGTTCAGAATC
LOC_Os06g03710
Target Sequence
GGCGTCCACAACAGCATCACATTCTCAGCAAAGCTAAGCTGACGATGAATGGTGATTAGGTGAAGAGAAAGAAAGAACAA
AGCCTTTTTTTACAGTGCTTCTTTTGTTAATGATGATTAGTTCATACAGTATGACAATTCTTTTATACATTCAGAGAAAA
GAAAGAAGAAAGAAAGGTGTAGTTTTTTGTTTTATAGATTGATAGGTGGAAAGATTCAATTAAATCAAATTCAATTCAAT
TTTTAGATTGTAATTCTTTATAAATATTCTTTTGGCTGTTGAGAGAGAGTCCCCTGCAAAATGTAGCTGCATGTAGAAGA
AAGAAAGCAAAGAAGCAGTAGATAGATTAGCAGGGGCAGCATCTCTCACAGTCACTATTAGTGTCTCCGGCTGTTATTAT
ACAACATTATTATTACAATCAAATTCTTTCATCATTCATTCTACATGTAATCTCTGTTCAGAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31950.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis