Browse Element(s) Details


Os.321.1.S1_at

Description gb:AK103416.1
DB_XREF= gi:32988625
TID=Os.321.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.321 (NCBI UniGene Cluster)
UG_TITLE=MRNA for root ferredoxin, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033128I21, full insert sequence.
FL= gb:AK103416.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3714011/11Ferredoxin-6, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37100OsAffx.27202.1.S1_at11/115+21604260..21606305hypothetical protein
LOC_Os05g37110NANA5+21608394..21608801hypothetical protein
LOC_Os05g37120Os.15248.1.S1_at11/115+21609316..21614639Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os05g37130Os.53494.1.S1_x_at11/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.17542.1.S1_at8/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.9217.1.S1_at1/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.24051.1.S1_x_at1/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37140Os.321.1.S1_at11/115+21622526..21624025Ferredoxin-6, chloroplast precursor, putative, expressed
LOC_Os05g37140OsAffx.27204.1.S1_x_at8/115+21622526..21624025Ferredoxin-6, chloroplast precursor, putative, expressed
LOC_Os05g37150Os.5264.1.S1_at11/115+21625298..21628492expressed protein
LOC_Os05g37150OsAffx.27204.1.S1_x_at2/115+21625298..21628492expressed protein
LOC_Os05g37160Os.17765.1.A1_at10/115+21628738..21632462Cell division protein ftsZ, putative, expressed
LOC_Os05g37170Os.23469.1.S1_at10/115+21632554..21641305Transcription factor HBP-1b, putative, expressed
LOC_Os05g37170Os.53949.1.S1_at1/115+21632554..21641305Transcription factor HBP-1b, putative, expressed
LOC_Os05g37180NANA5+21647720..21648037transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009416biological_processresponse to light stimulus
GO:0009767biological_processphotosynthetic electron transport
GO:0009570cellular_componentchloroplast stroma
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.321.1.S1_at--788--5371Chr05:21622846..21622870 (25 bp)
GAAGAACTCTACTAGGTCGCTCTTT
LOC_Os05g37140
Os.321.1.S1_at--559--2031Chr05:21622836..21622860 (25 bp)
ACTAGGTCGCTCTTTTTATGCTTCT
LOC_Os05g37140
Os.321.1.S1_at--178--3771Chr05:21622827..21622851 (25 bp)
CTCTTTTTATGCTTCTGTGGGCACA
LOC_Os05g37140
Os.321.1.S1_at--404--3891Chr05:21622813..21622837 (25 bp)
CTGTGGGCACATTTGCTGATTTCAA
LOC_Os05g37140
Os.321.1.S1_at--1136--3851Chr05:21622798..21622822 (25 bp)
CTGATTTCAAAGTGGACTCGCTGTT
LOC_Os05g37140
Os.321.1.S1_at--1035--2951Chr05:21622750..21622774 (25 bp)
AATGGCCATATCTTTGTATTAGTCT
LOC_Os05g37140
Os.321.1.S1_at--93--10071Chr05:21622731..21622755 (25 bp)
TAGTCTTTTGATGGGACCGTGTCAT
LOC_Os05g37140
Os.321.1.S1_at--7--8651Chr05:21622720..21622744 (25 bp)
TGGGACCGTGTCATATGAGTTGTGA
LOC_Os05g37140
Os.321.1.S1_at--155--9751Chr05:21622692..21622716 (25 bp)
TAATTGTCGTAGTCCTGTTCAGCAT
LOC_Os05g37140
Os.321.1.S1_at--541--2111Chr05:21622619..21622643 (25 bp)
ACATGTTATCAGAAGTTGTGTGTAA
LOC_Os05g37140
Os.321.1.S1_at--1014--7851Chr05:21622593..21622617 (25 bp)
GGTATTATTGTGGATCACTTCCAGT
LOC_Os05g37140
Target Sequence 
GAAGAACTCTACTAGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGATTTCAAAGTGGACTCGCTGTTCAGTTAG
TTTTCGCTATCCAAAAAATGGCCATATCTTTGTATTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTG
TCGTAGTCCTGTTCAGCATTTCAAANTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGA
AGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis