Browse Element(s) Details


Os.32389.2.S1_at

Description gb:NM_190033.1
DB_XREF= gi:34907149
GEN=P0506E04.26
TID=Os.32389.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32389 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0506E04.26 (P0506E04.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0506E04.26 (P0506E04.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7068011/11Gamma-thionins family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70640OsAffx.23992.1.S1_at4/111+41224502..41225345hypothetical protein
LOC_Os01g70650OsAffx.11805.1.S1_x_at11/111+41226270..41226695Subtilisin N-terminal Region family protein
LOC_Os01g70650OsAffx.11805.1.S1_at11/111+41226270..41226695Subtilisin N-terminal Region family protein
LOC_Os01g70660Os.31355.2.S1_x_at11/111+41229343..41234287potassium uptake protein, expressed
LOC_Os01g70670Os.18167.1.A1_at10/111+41242189..41247610BTB/POZ domain containing protein, expressed
LOC_Os01g70680Os.32389.2.S1_at11/111+41248727..41249320Gamma-thionins family protein, expressed
LOC_Os01g70690OsAffx.8287.1.S1_x_at1/111+41250567..41250902Rapid ALkalinization Factor family protein
LOC_Os01g70700OsAffx.28769.1.S1_s_at11/111+41253053..41256206hypothetical protein
LOC_Os01g70700OsAffx.28769.3.S1_at7/111+41253053..41256206hypothetical protein
LOC_Os01g70700OsAffx.2336.1.S1_at2/111+41253053..41256206hypothetical protein
LOC_Os01g70710NANA1+41257342..41259258heavy metal-associated domain containing protein, expressed
LOC_Os01g70720Os.38191.2.S1_at11/111+41265313..41267845expressed protein
LOC_Os01g70720Os.10402.1.S1_x_at11/111+41265313..41267845expressed protein
LOC_Os01g70730Os.28450.1.S1_at10/111+41269394..41269818flowering promoting factor-like 1, putative, expressed
LOC_Os01g70740Os.21222.1.S1_s_at11/111+41273921..41276388expressed protein
LOC_Os01g70740Os.21222.1.S1_at10/111+41273921..41276388expressed protein
LOC_Os01g70740Os.6534.1.A1_at1/111+41273921..41276388expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32389.2.S1_at--514--631Chr01:41248757..41248781 (25 bp)
ATGCTTGCCATTGCCTTACTCATGG
LOC_Os01g70680
Os.32389.2.S1_at--1097--71Chr01:41248766..41248790 (25 bp)
ATTGCCTTACTCATGGCCATCCTCT
LOC_Os01g70680
Os.32389.2.S1_at--207--2011Chr01:41248798..41248921 (25 bp)
ACTCTCCGGCACAGAAGCTATCATC
LOC_Os01g70680
Os.32389.2.S1_at--251--8251Chr01:41248904..41248928 (25 bp)
GGCACAGAAGCTATCATCTGCAAAG
LOC_Os01g70680
Os.32389.2.S1_at--980--2331Chr01:41248925..41248949 (25 bp)
AAAGCAAGGAGCAAGATGTACCGCG
LOC_Os01g70680
Os.32389.2.S1_at--904--8231Chr01:41248961..41248985 (25 bp)
GGCAACAGAAACTGCGCCATGATCT
LOC_Os01g70680
Os.32389.2.S1_at--897--4331Chr01:41248977..41249001 (25 bp)
CCATGATCTGCGTCCACGAGGAGTA
LOC_Os01g70680
Os.32389.2.S1_at--762--1771Chr01:41249003..41249027 (25 bp)
ACCGGCGGCTACTGCTCCAAGGGCG
LOC_Os01g70680
Os.32389.2.S1_at--323--1091Chr01:41249022..41249046 (25 bp)
AGGGCGTCTTCTCCAAGTGCATGTG
LOC_Os01g70680
Os.32389.2.S1_at--334--7151Chr01:41249027..41249051 (25 bp)
GTCTTCTCCAAGTGCATGTGCACCA
LOC_Os01g70680
Os.32389.2.S1_at--204--4151Chr01:41249112..41249136 (25 bp)
CGCCGTTGCGTGAGGCCCGTGTCCA
LOC_Os01g70680
Target Sequence 
ATGCTTGCCATTGCCTTACTCATGGCCATCCTCTTCGCCTCACTCTCCGGCACAGAAGCTATCATCTGCAAAGCAAGGAG
CAAGATGTACCGCGGGAAGTGCAGGGGCAACAGAAACTGCGCCATGATCTGCGTCCACGAGGAGTACACCGGCGGCTACT
GCTCCAAGGGCGTCTTCTCCAAGTGCATGTGCACCAAGCGGTGTGGCGGCGGCGGCGGTGGCGGCGGAGGAGGAGGAGGC
GGCGGCGGCGATGAGCCGCCGTTGCGTGAGGCCCGTGTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32389.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis