Browse Element(s) Details


Os.32455.1.S1_at

Description gb:AK067516.1
DB_XREF= gi:32977534
TID=Os.32455.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.32455 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0046E05.9 (P0046E05.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112J21, full insert sequence.
FL= gb:AK067516.1 gb:AK104228.1 gb:AK104728.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5467011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54620Os.18724.2.S1_x_at11/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54620Os.18724.1.S1_at11/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54620Os.18724.1.S1_a_at11/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54620OsAffx.16586.1.S1_x_at1/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54630OsAffx.23789.1.S1_at2/111+31758779..31760050Leucine Rich Repeat family protein
LOC_Os01g54640OsAffx.24460.1.S1_at5/111+31761117..31762939retrotransposon protein, putative, LINE subclass
LOC_Os01g54650Os.31312.5.S1_x_at3/111+31767220..31770475retrotransposon protein, putative, unclassified
LOC_Os01g54650Os.31312.2.S1_x_at3/111+31767220..31770475retrotransposon protein, putative, unclassified
LOC_Os01g54660OsAffx.22492.1.S1_x_at1/111+31771104..31777220retrotransposon protein, putative, unclassified
LOC_Os01g54660OsAffx.22492.1.S1_at1/111+31771104..31777220retrotransposon protein, putative, unclassified
LOC_Os01g54670Os.32455.1.S1_at11/111+31780183..31784396expressed protein
LOC_Os01g54680Os.28943.1.S1_x_at1/111+31788870..31792095retrotransposon protein, putative, unclassified
LOC_Os01g54690NANA1+31793164..31798211retrotransposon protein, putative, unclassified
LOC_Os01g54700Os.51954.1.S1_at11/111+31800838..31804313transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g54700Os.32801.1.S1_x_at11/111+31800838..31804313transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g54714OsAffx.23790.1.S1_at11/111+31807618..31813573retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32455.1.S1_at--72--7091Chr01:31782503..31782527 (25 bp)
GTCAAGTTGGCTTCCATAATACCAG
LOC_Os01g54670
Os.32455.1.S1_at--729--7751Chr01:31780828..31780852 (25 bp)
GGTGATCGTCGAGAAGCGCGTCAAT
LOC_Os01g54670
Os.32455.1.S1_at--716--10031Chr01:31780773..31780796 (24 bp)
TAGAGCGCCGGCCTGATCTGAAAGC
LOC_Os01g54670
Os.32455.1.S1_at--326--9931Chr01:31780529..31780553 (25 bp)
TACGGAGCTACAAGGGCCTCATGGT
LOC_Os01g54670
Os.32455.1.S1_at--1043--1451Chr01:31780499..31780523 (25 bp)
AGAAGATGACCTCCAACCGCCAGAT
LOC_Os01g54670
Os.32455.1.S1_at--686--8011Chr01:31780444..31780468 (25 bp)
GGAGGACGACTTCGTCTGATCCATC
LOC_Os01g54670
Os.32455.1.S1_at--356--1911Chr01:31780340..31780364 (25 bp)
ACGTGTTTCTCTGTACATCATCCAT
LOC_Os01g54670
Os.32455.1.S1_at--977--231Chr01:31780313..31780337 (25 bp)
ATATAAGCGTGCGTGATCGTCTCAC
LOC_Os01g54670
Os.32455.1.S1_at--1054--1151Chr01:31780283..31780307 (25 bp)
AGTCTCCCTGGAACGGTTTCTGCAG
LOC_Os01g54670
Os.32455.1.S1_at--231--7511Chr01:31780245..31780269 (25 bp)
GTGGTAGTAGCACATCTCTGTACAT
LOC_Os01g54670
Os.32455.1.S1_at--73--7031Chr01:31780226..31780250 (25 bp)
GTACATACACATGGTCCCTAGCAAT
LOC_Os01g54670
Target Sequence 
GTCAAGTTGGCTTCCATAATACCAGGATGGTTCGCGTGGTGATCGTCGAGAAGCGCGTCAATGAGATCATCAACAGGTTG
AACAAGACCAGGGTAGAGCGCCGGCCTGATCTGAAAGCCGAGAAGGACGCGTCGAACGCGGCGGAGAAGGCGGAGAGGAA
GATGCAGCTGAAGGAGAAGAGGCGGCGGGAGGAGATGGAGAGGCTGGAGAAGGAGAGGCGGGCGGAGATACGGAGCTACA
AGGGCCTCATGGTCGCCGAGAAGATGACCTCCAACCGCCAGATCGCCTCCGCCGGCAACTCCATGCAGGAGATGGAGGAC
GACTTCGTCTGATCCATCCATCCATCCGTCCGAAGCCAGCAACCGCTCCCGGGCATGCGTGCGTGCGTGCGTGCGTGCGT
AACGTACGTGTGCGGCCACGTGTTTCTCTGTACATCATCCATCCATATAAGCGTGCGTGATCGTCTCACCGGTCAGTCTC
CCTGGAACGGTTTCTGCAGTTCTGCTATAGTAGTGGTAGTAGCACATCTCTGTACATACACATGGTCCCTAGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32455.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis