Browse Element(s) Details


Os.32488.1.S1_at

Description gb:AK061478.1
DB_XREF= gi:32971496
TID=Os.32488.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.32488 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome 10, OSJNBa0076F20.4 (OSJNBa0077F02.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-G06, full insert sequence.
FL= gb:AK104173.1 gb:AK120684.1 gb:AK104124.1 gb:AK060411.1 gb:AK061478.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2312011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23070OsAffx.22722.1.S1_x_at1/117+13010649..13016112retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23080OsAffx.20628.2.S1_at11/117+13017287..13018624retrotransposon protein, putative, unclassified
LOC_Os07g23080OsAffx.20628.2.S1_x_at11/117+13017287..13018624retrotransposon protein, putative, unclassified
LOC_Os07g23090OsAffx.22171.1.S1_at11/117+13018919..13020408retrotransposon protein, putative, unclassified
LOC_Os07g23100OsAffx.16372.1.S1_at11/117+13022957..13023649hypothetical protein
LOC_Os07g23110Os.31900.1.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_x_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23120Os.32488.1.S1_at11/117+13035830..13036946expressed protein
LOC_Os07g23130OsAffx.16373.1.S1_at11/117+13039086..13040891hypothetical protein
LOC_Os07g23140OsAffx.22169.1.S1_at11/117+13047554..13047793hypothetical protein
LOC_Os07g23150Os.37141.1.S1_at11/117+13051277..13053598Transferase family protein, expressed
LOC_Os07g23169Os.35362.1.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169Os.41695.15.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16375.2.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_at9/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.27699.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.5264.1.S1_at1/117+13056164..13066591expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32488.1.S1_at--559--8911Chr07:13036268..13036292 (25 bp)
TGAGCACGCAGAGCGGCGCGTACCT
LOC_Os07g23120
Os.32488.1.S1_at--646--9031Chr07:13036244..13036268 (25 bp)
TGCACCGCTTCATGTGGCTGGACGA
LOC_Os07g23120
Os.32488.1.S1_at--382--6151Chr07:13036206..13036230 (25 bp)
GAGGTGCCCTTCGTGTGGAACTTCC
LOC_Os07g23120
Os.32488.1.S1_at--678--2211Chr07:13036088..13036112 (25 bp)
ACAAGAACTGCGAGTTCGCGGAGCT
LOC_Os07g23120
Os.32488.1.S1_at--1128--10631Chr07:13036074..13036098 (25 bp)
TTCGCGGAGCTCTGGGTCCAGGAAC
LOC_Os07g23120
Os.32488.1.S1_at--1082--3891Chr07:13036063..13036087 (25 bp)
CTGGGTCCAGGAACGTGACGCGTAT
LOC_Os07g23120
Os.32488.1.S1_at--946--931Chr07:13036010..13036034 (25 bp)
AGGAAGAGCACGAGCCCAAGGCCAT
LOC_Os07g23120
Os.32488.1.S1_at--1047--9431Chr07:13035963..13035987 (25 bp)
TCGGCAGTTCCCGTGGACGCCTGAG
LOC_Os07g23120
Os.32488.1.S1_at--1015--8911Chr07:13035942..13035966 (25 bp)
TGAGCCTCACGTGCGGTGCCTACTG
LOC_Os07g23120
Os.32488.1.S1_at--717--4671Chr07:13035930..13035954 (25 bp)
GCGGTGCCTACTGTTTTCTAATAAT
LOC_Os07g23120
Os.32488.1.S1_at--1141--8811Chr07:13035904..13035928 (25 bp)
TGATTGGAATAAACTCATGACGGCC
LOC_Os07g23120
Target Sequence 
TGAGCACGCAGAGCGGCGCGTACCTGCACCGCTTCATGTGGCTGGACGACGCCGACATCGGCGAGGTGCCCTTCGTGTGG
AACTTCCTCGTGGGGCACAACCGCGTCGACCCCGCCGACACGGCCGGGACGGCGCCGCGCGCCATCCACTACACTTCCGG
CGGGCCGTGGTTCGAGCAGTACAAGAACTGCGAGTTCGCGGAGCTCTGGGTCCAGGAACGTGACGCGTATGAGGCCGAGG
CGGAGGAGGACGAGGAGAAGGAAGAGCACGAGCCCAAGGCCATCCTGCATGCCCCTGCTGCGCCGTCGGCAGTTCCCGTG
GACGCCTGAGCCTCACGTGCGGTGCCTACTGTTTTCTAATAATATGATTGGAATAAACTCATGACGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis