Browse Element(s) Details


Os.32596.1.S1_x_at

Description gb:AK063112.1
DB_XREF= gi:32973130
TID=Os.32596.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32596 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OSJNBa0019F11.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-D09, full insert sequence.
FL= gb:AK063112.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0263011/11expressed protein
LOC_Os06g027606/11hypothetical protein
LOC_Os02g570101/1129 kDa ribonucleoprotein, chloroplast, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02580Os.32113.1.S1_at11/116+907638..909323high-affinity nickel-transport family protein, putative, expressed
LOC_Os06g02590Os.52636.1.S1_at4/116+912780..920283START domain-containing protein, putative, expressed
LOC_Os06g02600Os.5273.2.S1_x_at10/116+921217..924267DAG protein, chloroplast precursor, putative, expressed
LOC_Os06g02610OsAffx.27445.2.S1_x_at11/116+924433..925154hypothetical protein
LOC_Os06g02610OsAffx.27445.1.S1_x_at4/116+924433..925154hypothetical protein
LOC_Os06g02620Os.44821.1.A1_x_at10/116+926340..931584DnaJ C terminal region family protein, expressed
LOC_Os06g02620Os.7738.1.S1_at8/116+926340..931584DnaJ C terminal region family protein, expressed
LOC_Os06g02630Os.32596.1.S1_x_at11/116+932239..935006expressed protein
LOC_Os06g02630OsAffx.27427.1.S1_at1/116+932239..935006expressed protein
LOC_Os06g02640OsAffx.27423.1.S1_at11/116+936167..939109hypothetical protein
LOC_Os06g02650Os.39915.1.A1_s_at11/116+940733..945388expressed protein
LOC_Os06g02650OsAffx.8785.1.S1_at2/116+940733..945388expressed protein
LOC_Os06g02650Os.32597.1.S1_x_at1/116+940733..945388expressed protein
LOC_Os06g02660OsAffx.27424.1.S1_at11/116+946958..948607hypothetical protein
LOC_Os06g02670OsAffx.27430.1.S1_at5/116+951808..952278hypothetical protein
LOC_Os06g02680Os.52461.1.S1_at1/116+958935..961222hypothetical protein
LOC_Os06g02680OsAffx.14477.1.S1_at1/116+958935..961222hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0009507cellular_componentchloroplast
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32596.1.S1_x_at--452--3992Chr06:1002999..1003023 (25 bp)
CGTGGTCCACTTCGGCGGCGACAAC
LOC_Os06g02760
Os.32596.1.S1_x_at--437--9412Chr06:1002908..1002932 (25 bp)
TCGTCGTGCCGCAGCAGGAGTCGCA
LOC_Os06g02760
Os.32596.1.S1_x_at--108--992Chr06:1002893..1002917 (25 bp)
AGGAGTCGCACTTCGTCACCAAGTC
LOC_Os06g02760
Os.32596.1.S1_x_at--1051--9392Chr06:1002881..1002905 (25 bp)
TCGTCACCAAGTCCGCGTTCCTGAA
LOC_Os06g02760
Os.32596.1.S1_x_at--1097--4053Chr02:34918060..34918079 (20 bp)
CGAGGCTCTACGACGGCGAGACCGA
LOC_Os02g57010
Os.32596.1.S1_x_at--961--7252Chr06:1002691..1002715 (25 bp)
GTCCATCTCCAGCTACTACGAGGTG
LOC_Os06g02760
Os.32596.1.S1_x_at--785--4511Chr06:932380..932404 (25 bp)
GCCCTTGCCCGGAGCCGTACAAGAA
LOC_Os06g02630
Os.32596.1.S1_x_at--519--3751Chr06:932355..932379 (25 bp)
CTCCGGTAACTGCTCCGGGAATAAT
LOC_Os06g02630
Os.32596.1.S1_x_at--733--7611Chr06:932339..932363 (25 bp)
GGGAATAATAGCACCGGCATCAAGG
LOC_Os06g02630
Os.32596.1.S1_x_at--788--7711Chr06:932315..932339 (25 bp)
GGGTGATCGATCAGCTAATTTCATT
LOC_Os06g02630
Os.32596.1.S1_x_at--527--6531Chr06:932274..932298 (25 bp)
GATTTCCAGATGCTACTGTAATTAA
LOC_Os06g02630
Target Sequence 
CGTGGTCCACTTCGGCGGCGACAACCTCGTCCGCCTCATCTACGGCGCCGCGGCGCAGACGGAGCTCGCCGCGTTCACGC
TCCCCGCGTTCGTCGTGCCGCAGCAGGAGTCGCACTTCGTCACCAAGTCCGCGTTCCTGAACGCCTCCGCGCTGCCGGCG
TCGCTCGCCGCGAGGCTCTACGACGGCGAGACCGACCAGGTGGTGGTGCAGGCCGTGGCGTCGCTCAGCTTCACCATCGG
CGGCGCGCGCGGCGTGAGCGCCGGCAGGCGCGGCCACAACTTCACCTTCCACTGCTGGCCGGTGTCCATCTCCAGCTACT
ACGAGGTGNNCGGCGGCGAGGCGTCGTGCANCCAGGACACCACCGAGGCGGCGGTCGCCNGNCCTCACCCACGACCGCTG
CATCGGCGGCCCTTGCCCGGAGCCGTACAAGAACTCCGGTAACTGCTCCGGGAATAATAGCACCGGCATCAAGGGGTGAT
CGATCAGCTAATTTCATTTCGCGGGGTGTAATTTGATTTCCAGATGCTACTGTAATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32596.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis