Browse Element(s) Details


Os.32600.1.S1_at

Description gb:AK069203.1
DB_XREF= gi:32979227
TID=Os.32600.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.32600 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033132J08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008D03, full insert sequence.
FL= gb:AK069203.1 gb:AK103559.1 gb:AK059651.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g354809/11C2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35444Os.4846.1.S1_at11/115+20972061..20973749expressed protein
LOC_Os05g35444OsAffx.1396.1.S1_x_at1/115+20972061..20973749expressed protein
LOC_Os05g35450OsAffx.14976.1.S1_at11/115+20979895..20980137hypothetical protein
LOC_Os05g35460Os.15008.1.S1_at11/115+20982245..20985211Patellin-5, putative, expressed
LOC_Os05g35470Os.5632.1.S1_a_at11/115+20995250..20996692Dienelactone hydrolase family protein, expressed
LOC_Os05g35470OsAffx.4527.1.S1_s_at11/115+20995250..20996692Dienelactone hydrolase family protein, expressed
LOC_Os05g35480Os.32600.1.S1_at9/115+20997900..21000872C2 domain-containing protein, putative, expressed
LOC_Os05g35490OsAffx.4528.1.S1_at11/115+21007912..21008274hypothetical protein
LOC_Os05g35500Os.10175.1.S1_at11/115+21016108..21017402MYB6, putative, expressed
LOC_Os05g35500Os.57514.1.S1_x_at2/115+21016108..21017402MYB6, putative, expressed
LOC_Os05g35510OsAffx.27178.1.S1_at11/115+21020180..21023083hypothetical protein
LOC_Os05g35510OsAffx.25135.2.S1_x_at1/115+21020180..21023083hypothetical protein
LOC_Os05g35510OsAffx.8277.2.S1_at1/115+21020180..21023083hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0004791molecular_functionthioredoxin-disulfide reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32600.1.S1_at--297--10791Chr05:20998457..20998481 (25 bp)
TTGTTGCCATTGTGCTGTATGTGAC
LOC_Os05g35480
Os.32600.1.S1_at--14--8691Chr05:20998438..20998462 (25 bp)
TGTGACACCATTCCAGGTTCTGCTG
LOC_Os05g35480
Os.32600.1.S1_at--995--7891Chr05:20998423..20998447 (25 bp)
GGTTCTGCTGGTTATTGCAATGCTA
LOC_Os05g35480
Os.32600.1.S1_at--710--9011Chr05:20998408..20998432 (25 bp)
TGCAATGCTATACCTGTTGCGCCAC
LOC_Os05g35480
Os.32600.1.S1_at--285--7291Chr05:20998356..20998380 (25 bp)
GTGCCTTTCAACTTCTACAGGAGAT
LOC_Os05g35480
Os.32600.1.S1_at--969--971Chr05:20998338..20998362 (25 bp)
AGGAGATTGCCTGCCAAGTCTGATA
LOC_Os05g35480
Os.32600.1.S1_at--547--4391Chr05:20998326..20998350 (25 bp)
GCCAAGTCTGATATGCTCCTTTGAG
LOC_Os05g35480
Os.32600.1.S1_at--507--3811Chr05:20998311..20998335 (25 bp)
CTCCTTTGAGCCCAATGCATTGAGA
LOC_Os05g35480
Os.32600.1.S1_at--117--931Chr05:20998037..20998061 (25 bp)
AGGCAGGCGCAAGCTAATCTTCAGT
LOC_Os05g35480
Os.32600.1.S1_at--1071--8411Chr05:20997899..20997923 (25 bp)
GGCCTTCTTTTTCAGTGGTCATGCA
NONE
Os.32600.1.S1_at--173--7131Chr05:20997882..20997906 (25 bp)
GTCATGCACTCATGCTGTTCTTGCT
NONE
Target Sequence 
TTGTTGCCATTGTGCTGTATGTGACACCATTCCAGGTTCTGCTGGTTATTGCAATGCTATACCTGTTGCGCCACCCCCGG
TTCCGCAGCAGGATGCCCTCTGTGCCTTTCAACTTCTACAGGAGATTGCCTGCCAAGTCTGATATGCTCCTTTGAGCCCA
ATGCATTGAGAACAAGAGAAAATGGAGGAAACCCTGTAACTTTGTTTCTCTCTTCCATTCAGTTCCCTACTGATTAGCAT
CAGATCAGATGTGAATATACTTAAGGAGTTGGTAAATTAGAGGCAAGTTAGCGGCCAGGGAATAATGTGTTCATTCGAAT
GTTATTTGCTCAGATAGGCAGAAAGAAGGGATTGACTGGACCNCTTCGAGTTTGGGGGGGCAGAGTTTGTTAATGTCGTG
TTTCTTGGGGTAAGAACAATAGGCAGGCGCAAGCTAATCTTCAGTGTATTTTGTTTATGGATTTGTGCCAATTTTGTTAT
TTTCTTCATGTAATCATGTACTACCTGTTGGATGATGATGTTTTGCANNTCTGTGTGCTTATTCCTCNTTGAAGCACTCG
GCCTTCTTTTTCAGTGGTCATGCACTCATGCTGTTCTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis