Browse Element(s) Details


Os.32749.2.S1_x_at

Description gb:NM_190013.1
DB_XREF= gi:34907109
GEN=OSJNBa0052O12.20
TID=Os.32749.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32749 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0052O12.20 (OSJNBa0052O12.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0052O12.20 (OSJNBa0052O12.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7048010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70440Os.34543.1.S1_at11/111+41124729..41125358expressed protein
LOC_Os01g70450NANA1+41129495..41131500hypothetical protein
LOC_Os01g70460Os.15295.3.S1_x_at11/111+41134008..41135229expressed protein
LOC_Os01g70470Os.5458.1.A1_at11/111+41139395..41140977expressed protein
LOC_Os01g70470Os.9623.2.S1_x_at1/111+41139395..41140977expressed protein
LOC_Os01g70480Os.32749.1.S1_at11/111+41149129..41150671hypothetical protein
LOC_Os01g70480Os.32749.2.S1_x_at10/111+41149129..41150671hypothetical protein
LOC_Os01g70480Os.14525.1.S1_at1/111+41149129..41150671hypothetical protein
LOC_Os01g70490Os.17158.1.S1_at10/111+41152561..41157146Potassium transporter 5, putative, expressed
LOC_Os01g70500Os.31293.1.S1_at10/111+41160454..41161710expressed protein
LOC_Os01g70509NANA1+41163696..41164196NA
LOC_Os01g70520Os.26537.1.S1_a_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.26537.2.S1_x_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.26537.1.S1_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.51558.1.S1_x_at1/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32749.2.S1_x_at--27--3111Chr01:41150373..41150397 (25 bp)
AATATGGGTCGTCAATGCCTTTGCC
LOC_Os01g70480
Os.32749.2.S1_x_at--632--2651Chr01:41150338..41150362 (25 bp)
AAGCCAAGTGCAGAATCCAGCTCTT
LOC_Os01g70480
Os.32749.2.S1_x_at--464--6651Chr01:41150278..41150302 (25 bp)
GTTGATGGCTCATATTACCCTAGTG
LOC_Os01g70480
Os.32749.2.S1_x_at--170--951Chr01:41150243..41150267 (25 bp)
AGGAACTGGCGCTGTTCTCAGGGAC
LOC_Os01g70480
Os.32749.2.S1_x_at--343--9531Chr01:41150228..41150252 (25 bp)
TCTCAGGGACAGCTCTGGGAACCTA
LOC_Os01g70480
Os.32749.2.S1_x_at--660--7591Chr01:41150212..41150236 (25 bp)
GGGAACCTAATTTTTGCGGCTTGTG
LOC_Os01g70480
Os.32749.2.S1_x_at--546--8671Chr01:41150191..41150215 (25 bp)
TGTGGTGTTTTGCACAGACCGGCAA
LOC_Os01g70480
Os.32749.2.S1_x_at--236--1391Chr01:41150176..41150200 (25 bp)
AGACCGGCAAGTGCTCTGGAAGCTG
LOC_Os01g70480
Os.32749.2.S1_x_at--3--5331Chr01:41150134..41150158 (25 bp)
GAAGGGATCAGCATGGCGCTACAAT
LOC_Os01g70480
Os.32749.2.S1_x_at--332--8711Chr01:41150034..41150058 (25 bp)
TGTCCGATTTGGCATTCCTGATCAG
LOC_Os01g70480
Os.32749.2.S1_x_at--818--271Chr01:41147142..41147166 (25 bp)
ATAGGCCTGAGCAAAATGTTCCAAA
NONE
Target Sequence 
AATATGGGTCGTCAATGCCTTTGCCAAGACAATGCAAGCCAAGTGCAGAATCCAGCTCTTGGATAAGACCACAGGAAGGC
TGGATGAAGCTAAATGTTGATGGCTCATATTACCCTAGTGATGGGAAGGGAGGAACTGGCGCTGTTCTCAGGGACAGCTC
TGGGAACCTAATTTTTGCGGCTTGTGGTGTTTTGCACAGACCGGCAAGTGCTCTGGAAGCTGAGATGGTAGATTGTAGGG
AAGGGATCAGCATGGCGCTACAATGGACGCTGCTGCCCATCATTGTGGAAACGGACTGCTTGGAGATGGTGCAATTGATT
CACTCTGATGAGAAGGCCATGTCCGATTTGGCATTCCTGATCAGGGAAGTTAAGCTCCTTCTTAAAGGAAATAGGGAGAT
TGTCATAAAAAAAGTTAGTCGTGGTCAAAGCAGAGACTGTCATGTCTTAGCAAATAAAGGTAGATATAGGCCTGAGCAAA
ATGTTCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32749.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis