Browse Element(s) Details


Os.32865.1.S1_at

Description gb:AK073592.1
DB_XREF= gi:32983615
TID=Os.32865.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32865 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative elongation factor 2 (P0690B02.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033048F11, full insert sequence.
FL= gb:AK102586.1 gb:AK073592.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5247011/11Elongation factor 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52420OsAffx.2313.1.S1_at11/111+30446858..30447088hypothetical protein
LOC_Os01g52430Os.40626.2.S1_x_at6/111+30451798..30455596hAT family dimerisation domain containing protein
LOC_Os01g52430Os.40626.1.S1_at5/111+30451798..30455596hAT family dimerisation domain containing protein
LOC_Os01g52430OsAffx.23764.1.S1_at1/111+30451798..30455596hAT family dimerisation domain containing protein
LOC_Os01g52440OsAffx.23764.1.S1_at11/111+30457211..30457732hypothetical protein
LOC_Os01g52450Os.41826.1.S1_x_at10/111+30458236..30462095Hexokinase 2, putative, expressed
LOC_Os01g52460Os.23127.1.S1_s_at11/111+30463938..30469516protein of unknown function, TIGR01935 containing protein, expressed
LOC_Os01g52460OsAffx.7779.1.S1_at6/111+30463938..30469516protein of unknown function, TIGR01935 containing protein, expressed
LOC_Os01g52470Os.32865.1.S1_at11/111+30470494..30473674Elongation factor 2, putative, expressed
LOC_Os01g52480Os.50867.1.S1_at11/111+30482512..30484489senescence/dehydration-associated protein, putative, expressed
LOC_Os01g52490Os.12357.1.S1_at11/111+30484794..3048662140S ribosomal protein S24, putative, expressed
LOC_Os01g52500Os.421.1.S1_a_at11/111+30492864..30498505NADP-dependent malic enzyme, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0003746molecular_functiontranslation elongation factor activity
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32865.1.S1_at--1064--8531Chr01:30471060..30471084 (25 bp)
TGGAGCCCATGTACCAGGTGGACAT
LOC_Os01g52470
Os.32865.1.S1_at--603--5631Chr01:30471040..30471064 (25 bp)
GACATCCAGGTTCCCAAGACGGCGG
LOC_Os01g52470
Os.32865.1.S1_at--549--9391Chr01:30470905..30470929 (25 bp)
TCGTTCGACTTCACCGAGAAGCTGC
LOC_Os01g52470
Os.32865.1.S1_at--736--2891Chr01:30470785..30470809 (25 bp)
AAGGTGATCACCGACATCAGGAAGA
LOC_Os01g52470
Os.32865.1.S1_at--176--8151Chr01:30470717..30470741 (25 bp)
GGACAAGCTTTGAGCTGCCTCTCTA
LOC_Os01g52470
Os.32865.1.S1_at--146--4451Chr01:30470701..30470725 (25 bp)
GCCTCTCTACATACGTATCCTAGTT
LOC_Os01g52470
Os.32865.1.S1_at--24--6091Chr01:30470634..30470658 (25 bp)
GAGTATGGTCTTGGTCTTTCAAATT
LOC_Os01g52470
Os.32865.1.S1_at--218--3151Chr01:30470613..30470637 (25 bp)
AATTAAGTGTGTCTCCTGTCTCTTC
LOC_Os01g52470
Os.32865.1.S1_at--746--10671Chr01:30470591..30470615 (25 bp)
TTCCTCTGCTAACTGTTTCGAGTCT
LOC_Os01g52470
Os.32865.1.S1_at--77--231Chr01:30470565..30470589 (25 bp)
ATATTGGTTAGCCAGCCTTTGTGCC
LOC_Os01g52470
Os.32865.1.S1_at--400--4451Chr01:30470551..30470575 (25 bp)
GCCTTTGTGCCAGTCAGTTTAGGAT
LOC_Os01g52470
Target Sequence 
TGGAGCCCATGTACCAGGTGGACATCCAGGTTCCCAAGACGGCGGTGGGCAACGTCTACGGCGTGCTCAACAGCAGGAAC
GGCGAGCTGGTGGAAGAGAGCGAGAGGACTGGCACGCCCTTGTCCAACCTCAGGTTCTACCTCCCCGTCGCCAAGTCGTT
CGACTTCACCGAGAAGCTGCGCGCCGAGACGTCCGGCCAGGCCTTCCCGCAGTGCATCTTCCACCACTGGCAGACCATGC
GGTCTGATCCGTTCCAGGAGGGCTCCGAAGCTGCCAAGGTGATCACCGACATCAGGAAGAGGAAGGGTCTCAAGGACATC
ATCACCCCGCTCTCAGACTACGAGGACAAGCTTTGAGCTGCCTCTCTACATACGTATCCTAGTTTTGAGTTTTTGAGTTT
TGAGTTTGGTCTAATTTTGNGTTTTTGAGTATGGTCTTGGTCTTTCAAATTAAGTGTGTCTCCTGTCTCTTCCTCTGCTA
ACTGTTTCGAGTCTGATATTGGTTAGCCAGCCTTTGTGCCAGTCAGTTTAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32865.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis