Browse Element(s) Details


Os.32936.1.S1_at

Description gb:AK102322.1
DB_XREF= gi:32987531
TID=Os.32936.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.32936 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Arabidopsis thaliana hypothetical protein T16H5.200 (T04765) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033090J07, full insert sequence.
FL= gb:AK063812.1 gb:AK102322.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0650011/11lectin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06410OsAffx.23135.1.S1_at11/111+3031030..3031590hypothetical protein
LOC_Os01g06420OsAffx.22993.1.S1_at11/111+3031861..3032493hypothetical protein
LOC_Os01g06430OsAffx.23042.1.S1_at11/111+3033492..3034091hypothetical protein
LOC_Os01g06440Os.31782.1.S1_at11/111+3034491..3035510expressed protein
LOC_Os01g06450OsAffx.10552.1.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06450OsAffx.10552.2.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06454Os.1460.2.S1_at10/111+3038282..3041148DNAJ protein, putative, expressed
LOC_Os01g06460Os.1460.1.S1_at11/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_x_at10/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_at1/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06470Os.174.1.S1_at11/111+3044234..3049067Importin alpha-2 subunit, putative, expressed
LOC_Os01g06480Os.56084.1.S1_at10/111+3048743..3049953Tha8, putative, expressed
LOC_Os01g06480Os.56084.1.S1_x_at10/111+3048743..3049953Tha8, putative, expressed
LOC_Os01g06490Os.24975.1.S1_a_at11/111+3051267..3054000Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g06500Os.32936.1.S1_at11/111+3055366..3056519lectin, putative, expressed
LOC_Os01g06510Os.46028.1.S1_at11/111+3057796..3063837arginyl-tRNA synthetase family protein, expressed
LOC_Os01g06520Os.34779.1.S1_at11/111+3064752..3068039Leucine Rich Repeat family protein, expressed
LOC_Os01g06530Os.1433.2.S1_at4/111+3075509..3079138retrotransposon protein, putative, unclassified
LOC_Os01g06530OsAffx.15865.1.S1_at1/111+3075509..3079138retrotransposon protein, putative, unclassified
LOC_Os01g06540OsAffx.10938.1.S1_at11/111+3080197..3081370PHD finger protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32936.1.S1_at--127--2471Chr01:3056021..3056045 (25 bp)
AACAACTGCTTCATGCTGTTTCCCA
LOC_Os01g06500
Os.32936.1.S1_at--169--1331Chr01:3055997..3056021 (25 bp)
AGAGGCTTGTCTATCACTTGGAGTG
LOC_Os01g06500
Os.32936.1.S1_at--96--6571Chr01:3055963..3055987 (25 bp)
GATTCTGGACTTGGAAACCTCTGAA
LOC_Os01g06500
Os.32936.1.S1_at--1049--9111Chr01:3055812..3055836 (25 bp)
TGCTGACACTGACACCCAGATCGAA
LOC_Os01g06500
Os.32936.1.S1_at--874--5451Chr01:3055773..3055797 (25 bp)
GAACGTCTGCTGGTTAGAGATCCAT
LOC_Os01g06500
Os.32936.1.S1_at--673--5391Chr01:3055746..3055770 (25 bp)
GAAGCTTGAACGGTCCTATCTTACA
LOC_Os01g06500
Os.32936.1.S1_at--916--6091Chr01:3055717..3055741 (25 bp)
GAGTCACCTATGAGGTTCTCTTTGA
LOC_Os01g06500
Os.32936.1.S1_at--704--51Chr01:3055682..3055706 (25 bp)
ATTGATCCTGCATACGGGTGGTCTG
LOC_Os01g06500
Os.32936.1.S1_at--1094--7491Chr01:3055665..3055689 (25 bp)
GTGGTCTGTCCCAGTGAACCTTCAG
LOC_Os01g06500
Os.32936.1.S1_at--1044--3651Chr01:3055646..3055670 (25 bp)
CTTCAGCTCAAGTTCCCTGATGGAA
LOC_Os01g06500
Os.32936.1.S1_at--37--6271Chr01:3055435..3055459 (25 bp)
GATGTGTTACTCTTCGATGATCATT
LOC_Os01g06500
Target Sequence 
AACAACTGCTTCATGCTGTTTCCCAGAGGCTTGTCTATCACTTGGAGTGAAGACCCCAGATTCTGGACTTGGAAACCTCT
GAAAGAAGGAAGCAGTGATGCTGACACTGACACCCAGATCGAAGTGCCGTCGCTGCAGAACGTCTGCTGGTTAGAGATCC
ATGGGAAGCTTGAACGGTCCTATCTTACACCAGGAGTCACCTATGAGGTTCTCTTTGAAGTAATGCTTATTGATCCTGCA
TACGGGTGGTCTGTCCCAGTGAACCTTCAGCTCAAGTTCCCTGATGGAACAGTCCAGCAGCGTAAAGAGAATCTTGAGGA
GAAGATCAGGATGAAATGGCTGGAGCTCAAGGTCGGGGNGGTGAAAACCCAGCAGGGGCAGAAGGGAGAGATTGAGATAT
CCATGTTTTGAGTATGATGGTGGGCTGTGGAAGAGAGGGCTACTAATCAAGGGAATCAAGATTCTCCCAAAACAATGATG
TGTTACTCTTCGATGATCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis