Browse Element(s) Details


Os.3294.1.S1_at

Description gb:AF372832.1
DB_XREF= gi:13991926
TID=Os.3294.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.3294 (NCBI UniGene Cluster)
DEF=Oryza sativa hexokinase II mRNA, complete cds.
PROD=hexokinase II
FL= gb:AK059853.1 gb:AF372832.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0989011/11Hexokinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09840NANA7+5231227..5232429expressed protein
LOC_Os07g09850OsAffx.16180.1.S1_at11/117+5235477..5238911hypothetical protein
LOC_Os07g09860OsAffx.5275.1.S1_s_at11/117+5242938..5244974No apical meristem protein
LOC_Os07g09860OsAffx.5275.2.S1_at11/117+5242938..5244974No apical meristem protein
LOC_Os07g09870Os.14649.1.S1_at11/117+5246639..5249371F-box domain containing protein, expressed
LOC_Os07g09870Os.36460.2.S1_x_at1/117+5246639..5249371F-box domain containing protein, expressed
LOC_Os07g09880OsAffx.28370.2.S1_at11/117+5250783..5252434expressed protein
LOC_Os07g09880OsAffx.28370.1.S1_x_at1/117+5250783..5252434expressed protein
LOC_Os07g09890Os.3294.1.S1_at11/117+5254686..5258064Hexokinase 1, putative, expressed
LOC_Os07g09900OsAffx.28371.1.S1_at11/117+5261709..5265610NB-ARC domain containing protein
LOC_Os07g09910OsAffx.16181.1.S1_at11/117+5270787..5271719stripe rust resistance protein Yr10, putative
LOC_Os07g09910OsAffx.15202.1.S1_at1/117+5270787..5271719stripe rust resistance protein Yr10, putative
LOC_Os07g09920OsAffx.16182.1.S1_at11/117+5279463..5282008disease resistance protein RPM1 homolog, putative

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Gene Ontology Classification
GO idTypeName
GO:0009747biological_processhexokinase-dependent signaling
GO:0010182biological_processsugar mediated signaling
GO:0005739cellular_componentmitochondrion
GO:0004396molecular_functionhexokinase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3294.1.S1_at--717--3411Chr07:5257510..5257534 (25 bp)
CAGAGGGCACATTTTCGGACGAAGA
LOC_Os07g09890
Os.3294.1.S1_at--792--9911Chr07:5257614..5257638 (25 bp)
TACTGGGACCCGAGCGATCGAATCG
LOC_Os07g09890
Os.3294.1.S1_at--488--6391Chr07:5257629..5257653 (25 bp)
GATCGAATCGTATCGCCATCGAGCA
LOC_Os07g09890
Os.3294.1.S1_at--819--9151Chr07:5257681..5257705 (25 bp)
TGCGCTGTTGGCAGCTGCAAACTCA
LOC_Os07g09890
Os.3294.1.S1_at--563--10131Chr07:5257709..5257733 (25 bp)
TATGCTGCTGCTCAAATCTCTACAA
LOC_Os07g09890
Os.3294.1.S1_at--975--6771Chr07:5257761..5257785 (25 bp)
GTTACTGGGCCGAATTAATTCTCTA
LOC_Os07g09890
Os.3294.1.S1_at--332--9751Chr07:5257776..5257800 (25 bp)
TAATTCTCTACAAGGTGATCTCAAT
LOC_Os07g09890
Os.3294.1.S1_at--914--3591Chr07:5257807..5257831 (25 bp)
CATTGTTGAGCTACTGGGACCTGAA
LOC_Os07g09890
Os.3294.1.S1_at--981--3571Chr07:5257849..5257873 (25 bp)
CATATGGTGGCCTCTTATCTGAAGT
LOC_Os07g09890
Os.3294.1.S1_at--457--7591Chr07:5257880..5257904 (25 bp)
GGGCTTCATATATGCTATTCTTCTG
LOC_Os07g09890
Os.3294.1.S1_at--1087--4871Chr07:5257893..5257917 (25 bp)
GCTATTCTTCTGTACTACTAGTCTA
LOC_Os07g09890
Target Sequence 
CAGAGGGCACATTTTCGGACGAAGAACAGTGGTCGCGATGGACGGTGGTCTATATGAGAAGTACCCTCAGTACAGGAGGT
ACATGAAGGAGGCTGTGGCTGAGCTACTGGGACCCGAGCGATCGAATCGTATCGCCATCGAGCACACGAAAGACGGATCA
GGGATCGGCGCTGCGCTGTTGGCAGCTGCAAACTCAAAGTATGCTGCTGCTCAAATCTCTACAAGGTGATCGCAATTGTT
ATAATTGTTGAGTTACTGGGCCGAATTAATTCTCTACAAGGTGATCTCAATTGTTATCATTGTTGAGCTACTGGGACCTG
AACAATCCAAGCATATCATCATATGGTGGCCTCTTATCTGAAGTATGGAGGGGCTTCATATATGCTATTCTTCTGTACTA
CTAGTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis