Browse Element(s) Details

Os.32997.1.S1_at

Description

gb:AK102131.1
DB_XREF= gi:32987340
TID=Os.32997.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.32997 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) kinetochore protein-like (P0492E07.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033085C17, full insert sequence.
FL= gb:AK102131.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os07g22680	11/11	Skp1 family, dimerisation domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os07g22640	Os.16249.2.S1_s_at	11/11	7	+	12745901..12758982	calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640	Os.16249.1.S1_a_at	11/11	7	+	12745901..12758982	calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640	Os.16249.1.S1_s_at	11/11	7	+	12745901..12758982	calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640	Os.16249.2.S1_x_at	11/11	7	+	12745901..12758982	calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22650	Os.50124.1.S1_at	11/11	7	+	12762046..12765019	xylulose kinase like protein, putative, expressed
LOC_Os07g22650	Os.48012.1.S1_x_at	8/11	7	+	12762046..12765019	xylulose kinase like protein, putative, expressed
LOC_Os07g22660	OsAffx.28541.2.S1_s_at	11/11	7	+	12767439..12769147	hypothetical protein
LOC_Os07g22670	Os.31679.1.S1_at	11/11	7	+	12770549..12772592	mTERF family protein, expressed
LOC_Os07g22680	Os.32997.1.S1_at	11/11	7	+	12775367..12776343	Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g22690	OsAffx.28542.1.S1_at	11/11	7	+	12779809..12780135	hypothetical protein
LOC_Os07g22700	Os.17328.1.S1_at	11/11	7	+	12782277..12788679	mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700	Os.17328.2.S1_x_at	10/11	7	+	12782277..12788679	mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700	Os.52782.1.S1_at	1/11	7	+	12782277..12788679	mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22710	Os.37974.1.S1_at	11/11	7	+	12793282..12801868	CDPK-related protein kinase, putative, expressed
LOC_Os07g22710	Os.2714.1.S1_s_at	11/11	7	+	12793282..12801868	CDPK-related protein kinase, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolism
GO:0007067	biological_process	mitosis
GO:0007140	biological_process	male meiosis
GO:0009793	biological_process	embryonic development (sensu Magnoliophyta)
GO:0000151	cellular_component	ubiquitin ligase complex
GO:0005634	cellular_component	nucleus
GO:0005730	cellular_component	nucleolus
GO:0005737	cellular_component	cytoplasm
GO:0005819	cellular_component	spindle
GO:0009524	cellular_component	phragmoplast
GO:0019005	cellular_component	SCF ubiquitin ligase complex
GO:0004842	molecular_function	ubiquitin-protein ligase activity
GO:0005515	molecular_function	protein binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.32997.1.S1_at--366--175	1	Chr07:12775858..12775882 (25 bp)	ACCTACTCGACATCAAAGGCCTCTT	LOC_Os07g22680
Os.32997.1.S1_at--518--55	1	Chr07:12775956..12775980 (25 bp)	ATCCGCAACGACTTCACCGAGGAAG	LOC_Os07g22680
Os.32997.1.S1_at--74--927	1	Chr07:12776024..12776048 (25 bp)	TCCGGAGTAGAAGCTAGCGTCCCCT	LOC_Os07g22680
Os.32997.1.S1_at--668--53	1	Chr07:12776081..12776105 (25 bp)	ATCGCTTAACCCGTCGCGTGTGGTT	LOC_Os07g22680
Os.32997.1.S1_at--220--931	1	Chr07:12776108..12776132 (25 bp)	TCCCCGTAGTTATCTCTGGTAGGTT	LOC_Os07g22680
Os.32997.1.S1_at--646--339	1	Chr07:12776137..12776161 (25 bp)	CAGAACTTCAGATCGAATCGGCGTT	LOC_Os07g22680
Os.32997.1.S1_at--693--935	1	Chr07:12776149..12776173 (25 bp)	TCGAATCGGCGTTCTTGCCTTTTTA	LOC_Os07g22680
Os.32997.1.S1_at--816--997	1	Chr07:12776172..12776196 (25 bp)	TACCTTTCCTTTGCATCATGTCCAA	LOC_Os07g22680
Os.32997.1.S1_at--848--745	1	Chr07:12776216..12776240 (25 bp)	GTGTCGATCGAAATGTTCAACTGCT	LOC_Os07g22680
Os.32997.1.S1_at--424--383	1	Chr07:12776273..12776297 (25 bp)	CTGCCGCTTTATGCTGATCTGTTCC	LOC_Os07g22680
Os.32997.1.S1_at--446--641	1	Chr07:12776288..12776312 (25 bp)	GATCTGTTCCTGCATGCAGTTGATT	LOC_Os07g22680

Target Sequence

ACCTACTCGACATCAAAGGCCTCTTCCACATCACCTGCCGCAAGGTCGCCGACATGCTCAAGGGCAAGACCTCCGAGGAG
ATGCGCCAGATCCTCAACATCCGCAACGACTTCACCGAGGAAGAAGACAAGGCAATCAAGGAGCAGAACCCCTGGGTCTT
CCCGGATCCGGAGTAGAAGCTAGCGTCCCCTCCCTCCCCGATCGAGCATCTGCTCTGCTCATCATCGCTTAACCCGTCGC
GTGTGGTTGCTCCCCGTAGTTATCTCTGGTAGGTTCGTTCAGAACTTCAGATCGAATCGGCGTTCTTGCCTTTTTACCTT
TCCTTTGCATCATGTCCAACNAGAACAGAATCTGGNGTGTGTCGATCGAAATGTTCAACTGCTTAATTGTTTGCATCAAC
TGAAATGTTTTGCCCCTGCCGCTTTATGCTGATCTGTTCCTGCATGCAGTTGATT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis