Browse Element(s) Details


Os.33034.2.S1_x_at

Description gb:NM_188002.1
DB_XREF= gi:34903087
TID=Os.33034.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33034 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1606010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16010Os.9177.1.S1_at11/111+9009804..9013402Breast carcinoma amplified sequence 2 family protein, expressed
LOC_Os01g16010OsAffx.22205.1.S1_at10/111+9009804..9013402Breast carcinoma amplified sequence 2 family protein, expressed
LOC_Os01g16020OsAffx.22204.1.S1_x_at11/111+9015013..9016386Geranylgeranyl hydrogenase, putative, expressed
LOC_Os01g16020OsAffx.22204.1.S1_at11/111+9015013..9016386Geranylgeranyl hydrogenase, putative, expressed
LOC_Os01g16030Os.35495.1.S1_s_at11/111+9016651..9020854ADP-ribosylation factor, putative, expressed
LOC_Os01g16030Os.35495.1.S1_at10/111+9016651..9020854ADP-ribosylation factor, putative, expressed
LOC_Os01g16040Os.10951.1.S1_at11/111+9021750..9025676Carrier protein, putative, expressed
LOC_Os01g16050NANA1+9026233..9031175transposon protein, putative, Mutator sub-class
LOC_Os01g16060OsAffx.11074.1.S1_s_at11/111+9038382..9042889expressed protein
LOC_Os01g16060Os.33034.2.S1_x_at10/111+9038382..9042889expressed protein
LOC_Os01g16060Os.22825.1.A1_at1/111+9038382..9042889expressed protein
LOC_Os01g16070NANA1+9050313..9050730hypothetical protein
LOC_Os01g16080Os.16709.1.S1_at9/111+9054660..9057841expressed protein
LOC_Os01g16080Os.16709.2.S1_x_at9/111+9054660..9057841expressed protein
LOC_Os01g16090Os.106.1.S1_at11/111+9060770..9063588RNA recognition motif family protein, expressed
LOC_Os01g16100OsAffx.2017.1.S1_at11/111+9064634..9067872Translin family protein, expressed
LOC_Os01g16100OsAffx.2017.1.S1_s_at10/111+9064634..9067872Translin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33034.2.S1_x_at--782--3112Chr03:29706488..29706512 (25 bp)
AATATACCCAGATCATTCCTAACCG
NONE
Os.33034.2.S1_x_at--551--6392Chr03:29706478..29706502 (25 bp)
GATCATTCCTAACCGTTGGATCCTC
NONE
Os.33034.2.S1_x_at--490--10852Chr03:29706463..29706487 (25 bp)
TTGGATCCTCTCATCTAACGACCTA
NONE
Os.33034.2.S1_x_at--256--451Chr01:9041582..9041601 (20 bp)
ATCTAACGACCTACGTTGTGGCTCG
LOC_Os01g16060
Os.33034.2.S1_x_at--488--4071Chr01:9041449..9041595 (25 bp)
CGACCTACGTTGTGGCTCGTCGCCA
LOC_Os01g16060
Os.33034.2.S1_x_at--213--8731Chr01:9041406..9041430 (25 bp)
TGTCATCGCCGGCTCGCCAATAGGC
LOC_Os01g16060
Os.33034.2.S1_x_at--519--1131Chr01:9041317..9041341 (25 bp)
AGTGCGCTGTGGCTGCTACACATTA
LOC_Os01g16060
Os.33034.2.S1_x_at--789--9851Chr01:9041301..9041325 (25 bp)
TACACATTAACTCCGCTCGACATCG
LOC_Os01g16060
Os.33034.2.S1_x_at--809--1791Chr01:9041266..9041290 (25 bp)
ACCGCTGTCGGTGCTGTCGATTTGT
LOC_Os01g16060
Os.33034.2.S1_x_at--508--9711Chr01:9041233..9041257 (25 bp)
TCAACTCTGCATCTTCGCCATAAGG
LOC_Os01g16060
Os.33034.2.S1_x_at--421--2931NONE
AAGGAAGGCAGTCTTCACATCCCTT
NONE
Target Sequence 
AATATACCCAGATCATTCCTAACCGTTGGATCCTCTCATCTAACGACCTACGTTGTGGCTCGTCGCCACTGCCATCCCCC
AGCCAATGTCATCGCCGGCTCGCCAATAGGCCCACCACCGTGCGCCTTAGCCCACCACCATCGCCTCGTCTCGTGTCGCC
ATCTCCCCTCAACACAGTGCGCTGTGGCTGCTACACATTAACTCCGCTCGACATCGCCGCCTGCCCACCGCTGTCGGTGC
TGTCGATTTGTCGTCATCCTCAACTCTGCATCTTCGCCATAAGGAAGGCAGTCTTCACATCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33034.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis