Browse Element(s) Details


Os.3318.1.S1_at

Description gb:AK100305.1
DB_XREF= gi:32985514
TID=Os.3318.1
CNT=35
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.3318 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0026A15.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078F15, full insert sequence.
FL= gb:AK100305.1 gb:AK065135.1 gb:AK119180.1 gb:AK098896.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3701011/11glycosyltransferase, putative, expressed
LOC_Os04g288201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36920OsAffx.25389.1.S1_at11/113+20442594..20445866NB-ARC domain containing protein, expressed
LOC_Os03g36930Os.57569.1.S1_at6/113+20447050..20451521Eukaryotic initiation factor 4A-3, putative, expressed
LOC_Os03g36944OsAffx.22709.1.S1_x_at11/113+20452370..20454531hypothetical protein
LOC_Os03g36944OsAffx.13203.1.S1_at2/113+20452370..20454531hypothetical protein
LOC_Os03g36960Os.30135.2.S1_x_at11/113+20455957..20456557expressed protein
LOC_Os03g36960Os.30135.1.S1_at11/113+20455957..20456557expressed protein
LOC_Os03g36970OsAffx.22708.5.S1_x_at11/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.5.S1_at11/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.2.S1_x_at5/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.1.S1_x_at2/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36980OsAffx.22708.3.S1_x_at11/113+20462201..20463295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36980OsAffx.22708.4.S1_x_at7/113+20462201..20463295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37000OsAffx.22706.1.S1_at11/113+20466138..20468283hypothetical protein
LOC_Os03g37000OsAffx.16865.1.S1_at1/113+20466138..20468283hypothetical protein
LOC_Os03g37000OsAffx.16865.1.S1_x_at1/113+20466138..20468283hypothetical protein
LOC_Os03g37010Os.3318.1.S1_at11/113+20470072..20473869glycosyltransferase, putative, expressed
LOC_Os03g37020NANA3+20474531..20475070hypothetical protein
LOC_Os03g37030NANA3+20484599..20485066hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3318.1.S1_at--465--7311Chr03:20470632..20470656 (25 bp)
GTGCTGGGCTCACAAACTGTGTGTT
LOC_Os03g37010
Os.3318.1.S1_at--1158--1511Chr03:20470599..20470623 (25 bp)
AGCATGCGACGCTCATTCAGATAGT
LOC_Os03g37010
Os.3318.1.S1_at--263--8531Chr03:20470560..20470584 (25 bp)
TGGACTGGATATCACGCACCGATTT
LOC_Os03g37010
Os.3318.1.S1_at--183--2211Chr03:20470503..20470527 (25 bp)
ACAAGCAATACAGCATCGGCGTCGA
LOC_Os03g37010
Os.3318.1.S1_at--1073--6431Chr03:20470462..20470486 (25 bp)
GATCAGTACCCTAGAGACCACGAGA
LOC_Os03g37010
Os.3318.1.S1_at--891--1711Chr03:20470413..20470437 (25 bp)
ACCAGCGCGGATTCGATTTCATCAG
LOC_Os03g37010
Os.3318.1.S1_at--667--411Chr03:20470393..20470417 (25 bp)
ATCAGGCAGACTTTCATGGACAAAC
LOC_Os03g37010
Os.3318.1.S1_at--478--5171Chr03:20470350..20470374 (25 bp)
GCAAGAGGTTCAGGCCTATTCTTCT
LOC_Os03g37010
Os.3318.1.S1_at--63--4312Chr04:16877906..16878207 (25 bp)
CCTATTCTTCTGGAGGCACTGGATA
LOC_Os04g28820
Os.3318.1.S1_at--1152--9191Chr03:20470313..20470337 (25 bp)
TAATCTAAACCCGTAGGCTTTGAGA
LOC_Os03g37010
Os.3318.1.S1_at--732--6031Chr03:20470292..20470316 (25 bp)
GAGATGCTCTTGTACAATGTTCCAT
LOC_Os03g37010
Target Sequence 
GTGCTGGGCTCACAAACTGTGTGTTCCTGCCACAGCATGCGACGCTCATTCAGATAGTNGCCATGGGGTGGCCTGGACTG
GATATCACGCACCGATTTCGGCAACCCTGCAGAGCTGATGGGTCTGAGGTACAAGCAATACAGCATCGGCGTCGACGAGA
GCAGCTTGACAGATCAGTACCCTAGAGACCACGAGATTTTCAAGAATCCTATCTCATTCCACCAGCGCGGATTCGATTTC
ATCAGGCAGACTTTCATGGACAAACAGAATGTGAAGCTGGACTGCAAGAGGTTCAGGCCTATTCTTCTGGAGGCACTGGA
TAATCTAAACCCGTAGGCTTTGAGATGCTCTTGTACAATGTTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis