Browse Element(s) Details


Os.33305.1.S1_at

Description gb:AK101034.1
DB_XREF= gi:32986243
TID=Os.33305.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.33305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023150O19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150O19, full insert sequence.
FL= gb:AK101034.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g413304/11Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41270NANA7+24732431..24733084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41280Os.6393.1.S1_at11/117+24735233..247404976-phosphogluconolactonase family protein, expressed
LOC_Os07g41290OsAffx.16671.1.S1_at11/117+24742760..24743414expressed protein
LOC_Os07g41300Os.26596.1.S1_s_at11/117+24745452..24746620Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
LOC_Os07g41300OsAffx.32241.1.S1_x_at7/117+24745452..24746620Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
LOC_Os07g41310Os.9592.1.S1_at11/117+24750092..24753702COBRA-like protein 2 precursor, putative, expressed
LOC_Os07g41320OsAffx.28857.1.S1_at10/117+24753756..24756457Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os07g41330Os.11994.1.S1_s_at11/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.5591.1.S1_at11/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330Os.11994.1.S1_at10/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330Os.33305.1.S1_at4/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.27250.3.S1_x_at1/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.27250.1.S1_x_at1/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41340Os.51451.1.S1_at11/117+24763984..24765018B12D protein, expressed
LOC_Os07g41340OsAffx.5592.1.S1_at1/117+24763984..24765018B12D protein, expressed
LOC_Os07g41350OsAffx.16673.1.S1_s_at11/117+24766403..24767370B12D protein, expressed
LOC_Os07g41360Os.5451.1.S1_at11/117+24771581..24774831Alpha-1,4-glucan-protein synthase, putative, expressed
LOC_Os07g41360Os.55265.1.S1_at1/117+24771581..24774831Alpha-1,4-glucan-protein synthase, putative, expressed
LOC_Os07g41370Os.4573.1.S1_at10/117+24786781..24791984MADS-box transcription factor 18, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0045039biological_processprotein import into mitochondrial inner membrane
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33305.1.S1_at--580--10411Chr07:24758417..24758441 (25 bp)
TTATGCATGCATATGTTAGTCCTGT
LOC_Os07g41330
Os.33305.1.S1_at--300--651Chr07:24758415..24758439 (25 bp)
ATGCATGCATATGTTAGTCCTGTAT
LOC_Os07g41330
Os.33305.1.S1_at--102--1151Chr07:24758400..24758424 (25 bp)
AGTCCTGTATGCTTTCAATTTCGTA
LOC_Os07g41330
Os.33305.1.S1_at--535--9271Chr07:24758398..24758422 (25 bp)
TCCTGTATGCTTTCAATTTCGTAGT
LOC_Os07g41330
Os.33305.1.S1_at--865--3851NONE
CTGATCCGGTTCTCGACCAGCAGGG
NONE
Os.33305.1.S1_at--590--10591NONE
TTCTCGACCAGCAGGGGGCAAACAA
NONE
Os.33305.1.S1_at--1039--2731NONE
AAGAAGTGTGCACCACAACTAGCGT
NONE
Os.33305.1.S1_at--593--2871NONE
AAGTGTGCACCACAACTAGCGTGTG
NONE
Os.33305.1.S1_at--12--7471NONE
GTGTGCACCACAACTAGCGTGTGGA
NONE
Os.33305.1.S1_at--610--5071NONE
GCACCACAACTAGCGTGTGGACTAT
NONE
Os.33305.1.S1_at--38--2191NONE
ACAACTAGCGTGTGGACTATAACAT
NONE
Target Sequence 
TTATGCATGCATATGTTAGTCCTGTATGCTTTCAATTTCGTAGTTGCACCTGTCACGCANNNNNNNNNNNNNANNNNTCN
NNNNCCANNNTNNGANNNNNNNNNNNNNNNNAGAATCGCAGGATGGCTGAGTGCACTGAAGCTCAGGCNGAGATTTTGGG
TAGTCTNGGAAAAAAAAGCTACATCAGAGCGAGATGGAATGCTTATTTGACGAACTCATGCGTGCGCACGACTTGTTTCT
ANGGCTATAAACCTCCCACAGAGGAAGGTCTTGGCCCCTGGCTCTTATATGTATTAATAATGTCATAATGTATGTGAGGC
TNTGATCCGTTTTAATTTACCATGGTATGTTTTGCAACTTTGCAAATGATGTAGCAGTAGCAGTAATAACCTATAGCATT
CTTGTCATTCAGTGTACTGGGCTCTTAAAAAGCCTCAACTTATGCTTCAAGCTNGNTTATAAANGTTTTGACACTTTTNG
AGNTTAGGATGTNGAAGTTATGCATTCTGTCTTCCCACTGATCCGGTTCTCGACCAGCAGGGGGCAAACAAGAAGTGTGC
ACCACAACTAGCGTGTGGACTATAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis