Browse Element(s) Details


Os.33446.1.A1_at

Description gb:AK100552.1
DB_XREF= gi:32985761
TID=Os.33446.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33446 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023103K13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023103K13, full insert sequence.
FL= gb:AK100552.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1325011/11Peptide transporter PTR2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13200Os.9893.1.S1_at11/113+7103982..7106242Peroxidase 53 precursor, putative, expressed
LOC_Os03g13210Os.159.1.S1_s_at11/113+7107383..7109455Peroxidase N precursor, putative, expressed
LOC_Os03g13220Os.9335.1.S1_at10/113+7111680..7115147expressed protein
LOC_Os03g13230Os.53534.1.S1_at11/113+7115764..7118010pentatricopeptide, putative, expressed
LOC_Os03g13240Os.11621.1.S1_at11/113+7118218..7122633Peptide transporter PTR2, putative, expressed
LOC_Os03g13250Os.33446.1.A1_at11/113+7126391..7130453Peptide transporter PTR2, putative, expressed
LOC_Os03g13260Os.28346.5.S1_at11/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.3.S1_x_at10/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.5.S1_x_at10/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13260Os.28346.4.S1_x_at9/113+7132495..7140483retrotransposon protein, putative, unclassified
LOC_Os03g13274Os.2360.1.S1_s_at11/113+7142498..7147975POT family protein, expressed
LOC_Os03g13290Os.50738.1.A1_x_at1/113+7149135..7150248hypothetical protein
LOC_Os03g13290Os.51278.1.S1_at1/113+7149135..7150248hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33446.1.A1_at--659--8892Chr03:4852623..4852642 (20 bp)
TGAGGTGTTCACAGCCATTGGCCAA
NONE
Os.33446.1.A1_at--828--9851Chr03:7126911..7126935 (25 bp)
TACAACCAGTCTCCAGATTCCATGA
LOC_Os03g13250
Os.33446.1.A1_at--190--4792Chr03:4852700..4852724 (25 bp)
GCTCTTGTTACGGTGTCGCTTGGAA
NONE
Os.33446.1.A1_at--1006--1212Chr03:4852733..4852757 (25 bp)
AGTTCATTCATACTGACCCTGGTTT
NONE
Os.33446.1.A1_at--1101--531Chr03:7126784..7126808 (25 bp)
ATCCGGGTTGGATCCCTGATAACTT
LOC_Os03g13250
Os.33446.1.A1_at--190--9012Chr03:4852806..4852830 (25 bp)
TGAATGAAGGCCATCTTGACCGCTT
NONE
Os.33446.1.A1_at--1018--10752Chr03:4852821..4852845 (25 bp)
TTGACCGCTTTTTCTGGCTCATAGC
NONE
Os.33446.1.A1_at--122--312Chr03:4852841..4852865 (25 bp)
ATAGCTGGCCTTAGTTTTCTGAATC
NONE
Os.33446.1.A1_at--462--9571Chr03:7126699..7126723 (25 bp)
TCTTCTTTTCGTCTACTATGCACAG
LOC_Os03g13250
Os.33446.1.A1_at--133--3611Chr03:7126533..7126557 (25 bp)
CATTGATTCTCCTCAGTGGTACTGG
LOC_Os03g13250
Os.33446.1.A1_at--604--10111Chr03:7126437..7126461 (25 bp)
TATGAAAGCATGTTGTTCCCCTCCA
LOC_Os03g13250
Target Sequence 
TGAGGTGTTCACAGCCATTGGCCAAGCCGAGTTCTTCTACAACCAGTCTCCAGATTCCATGAGAAGCTTGTGCTCCGCTT
TCGCTCTTGTTACGGTGTCGCTTGGAAGCTATCTTAGTTCATTCATACTGACCCTGGTTTCATATTTTACAACTCGAGAT
GATAATCCGGGTTGGATCCCTGATAACTTGAATGAAGGCCATCTTGACCGCTTTTTCTGGCTCATAGCTGGCCTTAGTTT
TCTGAATCTTCTTCTTTTCGTCTACTATGCACAGCAATACAAGTGCAAGAAAGCAGCTGCAATTTAATGTCAGCCTTCAT
AGAGCAATATTACTTGGACAAAGGAATTTATTGTACAGCAAATTGTATGTATATATTTTATCTCAAAAAATACTGAATAA
TCTCTTGTATATGTACATTGATTCTCCTCAGTGGTACTGGTACATAATATTACTTGGAGAATGGGAAAAAAAACAATCTT
CTTCTTGCTTTTGCTAGTCAGTTTATTTTCATATGAAAGCATGTTGTTCCCCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33446.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis