Browse Element(s) Details


Os.33553.1.S1_at

Description gb:AK100145.1
DB_XREF= gi:32985354
TID=Os.33553.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33553 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to Arabidopsis thaliana chromosome 1, At1g15060 (P0034C09.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012J21, full insert sequence.
FL= gb:AK100145.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4976011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49680Os.32672.1.S1_x_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.2.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.3.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49690Os.18690.1.S1_at11/111+28882793..28887542Serine/threonine protein phosphatase 6, putative, expressed
LOC_Os01g49700OsAffx.2285.1.S1_at11/111+28888541..28888850hypothetical protein
LOC_Os01g49710Os.38022.2.S1_x_at11/111+28893636..28894510Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49710Os.38022.1.S1_at3/111+28893636..28894510Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49720OsAffx.11535.1.S1_at11/111+28895823..28896613glutathione S-transferase GSTU6, putative, expressed
LOC_Os01g49730Os.57153.1.S1_at11/111+28898884..28899768expressed protein
LOC_Os01g49740Os.28814.1.S1_at11/111+28899980..28902522expressed protein
LOC_Os01g49740Os.28814.2.S1_x_at11/111+28899980..28902522expressed protein
LOC_Os01g49750Os.29043.1.S1_at11/111+28902662..28903521expressed protein
LOC_Os01g49760Os.33553.2.S1_x_at11/111+28904947..28910543expressed protein
LOC_Os01g49760Os.33553.1.S1_at11/111+28904947..28910543expressed protein
LOC_Os01g49770Os.7556.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.45918.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.7556.1.S1_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49780NANA1+28916796..28917296hypothetical protein
LOC_Os01g49790NANA1+28921794..28922069hypothetical protein
LOC_Os01g49800OsAffx.11536.1.S1_at11/111+28923828..28924902hypothetical protein
LOC_Os01g49810OsAffx.23731.1.S1_at11/111+28926142..28927092hypothetical protein
LOC_Os01g49820Os.41653.1.S1_x_at11/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49820Os.41653.1.S1_at10/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49820Os.20321.1.S1_at10/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33553.1.S1_at--223--8391Chr01:28909217..28909312 (25 bp)
GGCGAAAGGCTGTCCACGAAGTGTA
LOC_Os01g49760
Os.33553.1.S1_at--467--6991Chr01:28909310..28909334 (25 bp)
GTACCCTTGTATAATAGAGTTCCTC
LOC_Os01g49760
Os.33553.1.S1_at--785--6891Chr01:28909318..28909342 (25 bp)
GTATAATAGAGTTCCTCTCCCAGCA
LOC_Os01g49760
Os.33553.1.S1_at--765--10651Chr01:28909329..28909353 (25 bp)
TTCCTCTCCCAGCATGATGAAGTGT
LOC_Os01g49760
Os.33553.1.S1_at--1087--6271Chr01:28909386..28909410 (25 bp)
GATGTTAGAGCTCCAACACGCTATT
LOC_Os01g49760
Os.33553.1.S1_at--810--9211Chr01:28909397..28909421 (25 bp)
TCCAACACGCTATTGCACGAGTGCA
LOC_Os01g49760
Os.33553.1.S1_at--855--5091Chr01:28909411..28909435 (25 bp)
GCACGAGTGCACAATTTCATCCTAT
LOC_Os01g49760
Os.33553.1.S1_at--66--10311Chr01:28909496..28909520 (25 bp)
TTTCGCTCCCTTTTCTATATCCAAG
LOC_Os01g49760
Os.33553.1.S1_at--354--10391Chr01:28909506..28909530 (25 bp)
TTTTCTATATCCAAGGTCCAAGCTT
LOC_Os01g49760
Os.33553.1.S1_at--270--7271Chr01:28909521..28909545 (25 bp)
GTCCAAGCTTGTAGTTTATTACCAC
LOC_Os01g49760
Os.33553.1.S1_at--869--731Chr01:28909569..28909593 (25 bp)
ATGTAAATGTTTTATTCCTTCACAA
LOC_Os01g49760
Target Sequence 
GGCGAAAGGCTGTCCACGAAGTGTACCCTTGTATAATAGAGTTCCTCTCCCAGCATGATGAAGTGTCTTCCTAAGTTTTG
TTATTGGCGTAAATGTTAGATGTTAGAGCTCCAACACGCTATTGCACGAGTGCACAATTTCATCCTATATTGGAACTGAA
ATCATCAAAATGGTAATGGAATGGTGAGGTACAAAAGTGTGTTATTCGTTTCGCTCCCTTTTCTATATCCAAGGTCCAAG
CTTGTAGTTTATTACCACAACAGTTGATTTATAACCTATATATGTAAATGTTTTATTCCTTCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33553.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis