Browse Element(s) Details


Os.33639.1.S1_at

Description gb:AK099717.1
DB_XREF= gi:32984926
TID=Os.33639.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33639 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1144G04.15 (B1144G04.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013086I08, full insert sequence.
FL= gb:AK099717.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4864011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48580OsAffx.21504.1.S1_at11/111+28184796..28188979ubiquitin-conjugating enzyme E2, putative
LOC_Os01g48580OsAffx.23846.1.A1_at3/111+28184796..28188979ubiquitin-conjugating enzyme E2, putative
LOC_Os01g48590NANA1+28192397..28192723hypothetical protein
LOC_Os01g48600OsAffx.32032.4.S1_s_at11/111+28193682..28194201CDS, putative
LOC_Os01g48610Os.26755.1.S1_at11/111+28195566..28198695expressed protein
LOC_Os01g48620Os.41723.1.S1_at9/111+28202487..28205293expressed protein
LOC_Os01g48629NANA1+28208505..28209076NA
LOC_Os01g48640Os.33639.1.S1_at11/111+28209868..28212916expressed protein
LOC_Os01g48650Os.41248.2.A1_at6/111+28214900..28221119expressed protein
LOC_Os01g48650Os.41248.5.S1_x_at5/111+28214900..28221119expressed protein
LOC_Os01g48650OsAffx.31069.5.S1_at5/111+28214900..28221119expressed protein
LOC_Os01g48650OsAffx.31069.5.S1_x_at3/111+28214900..28221119expressed protein
LOC_Os01g48650OsAffx.30013.1.S1_x_at1/111+28214900..28221119expressed protein
LOC_Os01g48650OsAffx.23366.1.S1_at1/111+28214900..28221119expressed protein
LOC_Os01g48660Os.32087.1.S2_at11/111+28223202..28226040expressed protein
LOC_Os01g48660Os.32087.1.S1_at11/111+28223202..28226040expressed protein
LOC_Os01g48670OsAffx.19542.3.S1_x_at3/111+28227314..28231536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g48680Os.27644.1.S1_at11/111+28233459..28247798voltage-dependent calcium channel protein TPC1, putative, expressed
LOC_Os01g48680Os.27644.1.S1_s_at9/111+28233459..28247798voltage-dependent calcium channel protein TPC1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33639.1.S1_at--878--6751Chr01:28212336..28212360 (25 bp)
GTTCACGTCATCAACAATGGCCGTG
LOC_Os01g48640
Os.33639.1.S1_at--1110--2951Chr01:28212351..28212375 (25 bp)
AATGGCCGTGCTGCAGCGGAGAACT
LOC_Os01g48640
Os.33639.1.S1_at--311--5971Chr01:28212369..28212393 (25 bp)
GAGAACTCGCTGGTCGTCCGTGTCG
LOC_Os01g48640
Os.33639.1.S1_at--627--11Chr01:28212400..28212424 (25 bp)
ATTCGGGCACGCTGTGGGACGACCT
LOC_Os01g48640
Os.33639.1.S1_at--778--8651Chr01:28212412..28212436 (25 bp)
TGTGGGACGACCTCGCGTCGTACGC
LOC_Os01g48640
Os.33639.1.S1_at--457--1051Chr01:28212469..28212493 (25 bp)
AGGTGATCCTGAACGCGTTGTCCCG
LOC_Os01g48640
Os.33639.1.S1_at--131--7211Chr01:28212608..28212632 (25 bp)
GTCGTCGACTTACGTGTACGCGAGC
LOC_Os01g48640
Os.33639.1.S1_at--178--7351Chr01:28212760..28212784 (25 bp)
GTGAATACGAGATGGTGCCCACCAC
LOC_Os01g48640
Os.33639.1.S1_at--1122--6011Chr01:28212768..28212792 (25 bp)
GAGATGGTGCCCACCACGGTTAGCT
LOC_Os01g48640
Os.33639.1.S1_at--998--6771Chr01:28212786..28212810 (25 bp)
GTTAGCTCCCATCAGGAGGGCGACA
LOC_Os01g48640
Os.33639.1.S1_at--560--6011Chr01:28212873..28212897 (25 bp)
GAGAGGATACTGTCCCGTTATTTAC
LOC_Os01g48640
Target Sequence 
GTTCACGTCATCAACAATGGCCGTGCTGCAGCGGAGAACTCGCTGGTCGTCCGTGTCGCGGGCGATTCGGGCACGCTGTG
GGACGACCTCGCGTCGTACGCGGGGCTGGTCCTGGACGGGTTCCTCCTGCCGCAGGTGATCCTGAACGCGTTGTCCCGGT
CCAGGGCGAGGGCCATCTCGGCGTGGTTCTACGTCGGGGTGACCGTGCTCCGCGCGGCGCCTCACGTGTACGACGCGCTG
AGGGCTCGCGGCTACGTGCCGAGCGTGAGGCCGTCGTCGACTTACGTGTACGCGAGCCCACGCGACGATCTCTTCGGCGT
CGCGTGGGACGTCGCCGTGCCGTTGGGGGCGGCGTCGCTGGCGCTGCTGCTGTTCTTGCAGCAGCGGCTTGGAGGTGCCT
TCTTCGTGAGGGGCAGGAGGTTTGGTGAATACGAGATGGTGCCCACCACGGTTAGCTCCCATCAGGAGGGCGACAAGAAG
ATGGATCATGAACGCGGGGATGTTATAGCAAATTGAATGGGAGATTATTTTAAACTTGAGAGGATACTGTCCCGTTATTT
AC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis