Browse Element(s) Details


Os.33920.1.S1_at

Description gb:AK073516.1
DB_XREF= gi:32983539
TID=Os.33920.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33920 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0015K03.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042C06, full insert sequence.
FL= gb:AK073516.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g282507/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28190OsAffx.13093.1.S1_x_at11/113+16206420..16206953Dirigent-like protein, expressed
LOC_Os03g28204OsAffx.22940.2.S1_s_at11/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.1.S1_s_at10/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.5.S1_x_at9/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.5.S1_at8/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.2.S1_at8/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204Os.35344.3.S1_x_at7/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.3.S1_x_at7/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204Os.35344.18.S1_x_at6/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.31552.2.S1_at1/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28220OsAffx.10520.1.S1_at5/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.28003.2.S1_x_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.30450.1.S1_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.4453.1.S1_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28230OsAffx.28003.1.S1_at11/113+16218955..16220402transposase, putative
LOC_Os03g28250Os.33920.1.S1_at7/113+16225941..16226280hypothetical protein
LOC_Os03g28260OsAffx.3354.1.S1_at11/113+16229384..16231480Late embryogenesis abundant protein
LOC_Os03g28260Os.11330.1.S2_at3/113+16229384..16231480Late embryogenesis abundant protein
LOC_Os03g28270Os.45238.1.S1_at11/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28270Os.11360.1.S1_at1/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28270Os.50390.1.S1_at1/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28280OsAffx.22739.1.S1_at11/113+16248292..16248855hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33920.1.S1_at--1091--9131Chr03:16225819..16225843 (25 bp)
TGCGGATCCGCCAGCGTCAGTGCTC
NONE
Os.33920.1.S1_at--586--3391Chr03:16225830..16225854 (25 bp)
CAGCGTCAGTGCTCGGGCTGTCCTT
NONE
Os.33920.1.S1_at--650--1851Chr03:16225911..16225935 (25 bp)
ACGAAGACGGCTACCGTGACGATGA
NONE
Os.33920.1.S1_at--1162--831Chr03:16225941..16225965 (25 bp)
ATGGCTACGGCTTCCTTGCGACCCT
NONE
Os.33920.1.S1_at--141--4211Chr03:16225991..16226015 (25 bp)
CCGCCACAAGGTGCCTCAAGGGAAG
LOC_Os03g28250
Os.33920.1.S1_at--28--4451Chr03:16226003..16226027 (25 bp)
GCCTCAAGGGAAGCCCGCTTGTGAT
LOC_Os03g28250
Os.33920.1.S1_at--1022--3351Chr03:16226046..16226070 (25 bp)
CACCGCCGTGTGGAAGTTCATGGCG
LOC_Os03g28250
Os.33920.1.S1_at--175--6191Chr03:16226148..16226172 (25 bp)
GAGGACGCCGGAGTTTACGCTACGT
LOC_Os03g28250
Os.33920.1.S1_at--319--8011Chr03:16226157..16226181 (25 bp)
GGAGTTTACGCTACGTCGAGTCCTC
LOC_Os03g28250
Os.33920.1.S1_at--537--9932Chr03:16226168..16226192 (25 bp)
TACGTCGAGTCCTCCATGGATTTGG
LOC_Os03g28250
Os.33920.1.S1_at--326--6112Chr03:16226174..16226198 (25 bp)
GAGTCCTCCATGGATTTGGGATTTT
LOC_Os03g28250
Target Sequence 
TGCGGATCCGCCAGCGTCAGTGCTCGGGCTGTCCTTCACGGCGGTGAAGGAGGTGGATCCAGCGGTGGACGACGACGACG
GCTCCCGCGACGACGAAGACGGCTACCGTGACGATGACAACGATGGCTACGGCTTCCTTGCGACCCTTCTTGCTCGCCGG
CTCGCCGCTGTACCGCCACAAGGTGCCTCAAGGGAAGCCCGCTTGTGATGATGGTGATGGTCGTCGCCACCGCCGTGTGG
AAGTTCATGGCGTTCCTGAACAAGGCGGTGGCCACGGCGAGGTGTCGTGGGTGGCGGCCAAGGAGGTGGTGCAGCTGTAG
CGATTGGAGGAGGACGCCGGAGTTTACGCTACGTCGAGTCCTCCATGGATTTGGGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis